PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG815200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 341aa    MW: 36658.8 Da    PI: 6.0541
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG815200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.4e-14113164155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+++P++   ++ + + a+i+  A++Y+++L+
  Pavir.9NG815200.1.p 113 QRMTHIAVERNRRRQMNEYLAVLRSHMPPS---YAHRGDQASIVGGAINYVRELE 164
                          79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.21E-14111168No hitNo description
SuperFamilySSF474594.58E-17112177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.624112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-13112168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-11113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MALEAVVFSP AAAGHFGYSR GDSPYALPWC DMGGLGDLCA GGYWDQELDD AWAAAPAVWD  60
VDWAEAASRD DHSSDASSDR QQGKEAAPEP APAVRRKRRR TKVVKNKEEI ETQRMTHIAV  120
ERNRRRQMNE YLAVLRSHMP PSYAHRGDQA SIVGGAINYV RELEQLLQSL EVQKSIRNNR  180
RGGSTDAAGS SSSPFAAFFS FPQYSTSPAP GSSSSTSLGG SSNTSNNAAS SDVSSGGSAE  240
SGRPAAVADI EVTMVEGHAS LKVLARRRPK QLLKLVAGLH QLRIPPLHLN MTTVDAMVLY  300
TFSLKVEDDS KMGSVEDIAT AVHEILGSIQ QQQEEETAAM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19599RKRRR
295100RKRRRT
3113124RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG815200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9613971e-121EU961397.1 Zea mays clone 235094 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796362.10.0transcription factor bHLH94-like
SwissprotQ9C7T41e-73BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2S3ITH60.0A0A2S3ITH6_9POAL; Uncharacterized protein
TrEMBLA0A3L6TQL10.0A0A3L6TQL1_PANMI; Transcription factor bHLH94-like
STRINGPavir.Ia04907.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-27bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]