PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG793900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 436aa    MW: 49267.7 Da    PI: 5.7788
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG793900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605e-19134180148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l
  Pavir.9NG793900.1.p 134 KGQWTPEEDRKLVKLVEQFGLRKWSFIAQMLP-GRVGKQCRERWHNHL 180
                          799*****************************.*************97 PP
2Myb_DNA-binding53.46.1e-17188228345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           W++eEd  l++a+k+ G++ W+ Ia++++ gRt++++k++w+
  Pavir.9NG793900.1.p 188 IWSEEEDMVLIQAHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 228
                          6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.439129184IPR017930Myb domain
SuperFamilySSF466892.84E-32131227IPR009057Homeodomain-like
SMARTSM007171.1E-16133182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-30135187IPR009057Homeodomain-like
PfamPF139218.6E-19137194No hitNo description
CDDcd001672.44E-16137180No hitNo description
SMARTSM007171.3E-16185233IPR001005SANT/Myb domain
PROSITE profilePS5129419.938185235IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-21188233IPR009057Homeodomain-like
CDDcd001676.84E-14189231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MDFSCFQPNA GICNYLPFDC MQQQNGYYDF HPADHPFEAI GDYISAGSMV PPATFNDLGH  60
QYFDEREIKK PIFNHASSIS HRFGSQLPLL TPKTEVSNLI ETGLGSYKAY EMSDRFVPRK  120
KTSSNSLKKP NVVKGQWTPE EDRKLVKLVE QFGLRKWSFI AQMLPGRVGK QCRERWHNHL  180
RPNIKKDIWS EEEDMVLIQA HKEVGNKWAE IAKRLPGRTE NSIKNHWNAT KRRQFARRRS  240
RTSSKRPKSG TLLQNYIKGL GIGPSKNVAP LAQPTLPPSS PATTPGANPA KIDEMLGEHR  300
PSDILDLQGM LGVHEYNRRE TDQSCEELLA PICSDDFSVA DMCEGLFDTK EDASCFQVFA  360
VDEDVDMSYI FNHLDQAIKV DPEIDMEMMW DDDALGCAEP AGAGSAQMET VHVKEEMDLM  420
EMVAATQKYA ETEKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-461322342104C-Myb DNA-Binding Domain
1msf_C2e-461322342104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231246RRQFARRRSRTSSKRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG793900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432520.0AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796038.10.0transcription factor MYB41-like
TrEMBLA0A3L6TMH10.0A0A3L6TMH1_PANMI; Transcription factor MYB46-like
STRINGPavir.J02718.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.19e-60myb domain protein 98