PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG793400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 436aa MW: 49267.7 Da PI: 5.7788 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60 | 5e-19 | 134 | 180 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l Pavir.9NG793400.1.p 134 KGQWTPEEDRKLVKLVEQFGLRKWSFIAQMLP-GRVGKQCRERWHNHL 180 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 6.1e-17 | 188 | 228 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W++eEd l++a+k+ G++ W+ Ia++++ gRt++++k++w+ Pavir.9NG793400.1.p 188 IWSEEEDMVLIQAHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 228 6*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 30.439 | 129 | 184 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.84E-32 | 131 | 227 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-16 | 133 | 182 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-30 | 135 | 187 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 8.6E-19 | 137 | 194 | No hit | No description |
CDD | cd00167 | 2.44E-16 | 137 | 180 | No hit | No description |
SMART | SM00717 | 1.3E-16 | 185 | 233 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.938 | 185 | 235 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 188 | 233 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.84E-14 | 189 | 231 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MDFSCFQPNA GICNYLPFDC MQQQNGYYDF HPADHPFEAI GDYISAGSMV PPATFNDLGH 60 QYFDEREIKK PIFNHASSIS HRFGSQLPLL TPKTEVSNLI ETGLGSYKAY EMSDRFVPRK 120 KTSSNSLKKP NVVKGQWTPE EDRKLVKLVE QFGLRKWSFI AQMLPGRVGK QCRERWHNHL 180 RPNIKKDIWS EEEDMVLIQA HKEVGNKWAE IAKRLPGRTE NSIKNHWNAT KRRQFARRRS 240 RTSSKRPKSG TLLQNYIKGL GIGPSKNVAP LAQPTLPPSS PATTPGANPA KIDEMLGEHR 300 PSDILDLQGM LGVHEYNRRE TDQSCEELLA PICSDDFSVA DMCEGLFDTK EDASCFQVFA 360 VDEDVDMSYI FNHLDQAIKV DPEIDMEMMW DDDALGCAEP AGAGSAQMET VHVKEEMDLM 420 EMVAATQKYA ETEKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-46 | 132 | 234 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-46 | 132 | 234 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 246 | RRQFARRRSRTSSKRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG793400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243252 | 0.0 | AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796038.1 | 0.0 | transcription factor MYB41-like | ||||
TrEMBL | A0A3L6TMH1 | 0.0 | A0A3L6TMH1_PANMI; Transcription factor MYB46-like | ||||
STRING | Pavir.J02718.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2806 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 9e-60 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG793400.1.p |