PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG792400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 409aa MW: 42332.9 Da PI: 4.8685

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG792400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.9	2.1e-13	217	268	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 + +rrkq+NRe+ArrsR RK a + eLe v++L eN++L +l +++ Pavir.9NG792400.1.p 217 RLQRRKQSNRESARRSRSRKAAHLNELEAQVAQLRVENSSLLRRLADVNQKF 268 679**************************************98887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-15	213	277	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.254	215	270	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.1E-10	216	269	No hit	No description
Pfam	PF00170	3.5E-10	217	266	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.81E-9	217	266	No hit	No description
Pfam	PF12498	4.6E-50	284	401	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MERVFSVEEI PNPYWAPPQP QVAATGAVAA PGGGGGGGAG GAGDAAGAMN RCSSEWYFQK 60 FLEEAVLDSP GPVAGVGRGG GGGGVEAAES KPLGVAAAAS SAVVDPVEYN AMLKQKLEKD 120 LAAVAMWRVS GATPPERSAA GSSLPNVDVS HAVAFKPIGV ENKLAVAPVG GSGPQVVQNS 180 DILFKQTTSS SSREQSDDDD MEGEAETTGN ANPVQQRLQR RKQSNRESAR RSRSRKAAHL 240 NELEAQVAQL RVENSSLLRR LADVNQKFNE AAVDNRVLKA DVGTLRAKVK MAEDSVKRVT 300 GMNALFPAGS DMSSLSLPFN GSPSDSTSDA AVPIQDDPNS YFASPSEIGG NNGYMPEMAS 360 SAQEDDDFVN AALAAGKMDR TASLQRVASL EHLQKRMCGG PASSGSTS*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MERVFSVEEI PNPYWAPPQP QVAATGAVAA PGGGGGGGAG GAGDAAGAMN RCSSEWYFQK  60
FLEEAVLDSP GPVAGVGRGG GGGGVEAAES KPLGVAAAAS SAVVDPVEYN AMLKQKLEKD  120
LAAVAMWRVS GATPPERSAA GSSLPNVDVS HAVAFKPIGV ENKLAVAPVG GSGPQVVQNS  180
DILFKQTTSS SSREQSDDDD MEGEAETTGN ANPVQQRLQR RKQSNRESAR RSRSRKAAHL  240
NELEAQVAQL RVENSSLLRR LADVNQKFNE AAVDNRVLKA DVGTLRAKVK MAEDSVKRVT  300
GMNALFPAGS DMSSLSLPFN GSPSDSTSDA AVPIQDDPNS YFASPSEIGG NNGYMPEMAS  360
SAQEDDDFVN AALAAGKMDR TASLQRVASL EHLQKRMCGG PASSGSTS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.1392	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in developing seeds from 5 to 30 days after flowering (DAF). {ECO:0000269\|PubMed:11133985}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG792400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463740.1	0.0	light-inducible protein CPRF2
Swissprot	Q7X9A8	0.0	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	C5WX70	0.0	C5WX70_SORBI; Uncharacterized protein
STRING	Pavir.J21465.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3488	38	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	1e-39	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG792400.1.p

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]