PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG791600.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 841aa    MW: 92115.2 Da    PI: 6.2136
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG791600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.2e-182785357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le+l+  +++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  Pavir.9NG791600.3.p 27 KYVRYTPEQVEVLERLYIDCPKPSSSRRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 85
                         5678****************************************************996 PP
2START154.96.5e-491653732205
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+ +e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++ e+l d++  W +++++ e+      g  g
  Pavir.9NG791600.3.p 165 IAEETFTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVIEILKDRP-SWFRDCRSLEVFTMFPAGngG 253
                          789999****************************************************7777777777.***********999999999* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l +++++a+++lvp Rdf+++Ry+ + ++g+++++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h dl++r
  Pavir.9NG791600.3.p 254 TIELVYMQMYAPTTLVPaRDFWTLRYTTTTEDGSLMVCERSLSGSGGGPNaasAHQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAR 343
                          ********************************************99999999999*********************************** PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqce 205
                          +++++lr+l++s+++ ++k+++ +l+++++
  Pavir.9NG791600.3.p 344 SVPEVLRPLYESSRVVAQKMTTVALRHLRQ 373
                          *********************999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-17785IPR009057Homeodomain-like
PROSITE profilePS5007115.2892286IPR001356Homeobox domain
SMARTSM003895.3E-152490IPR001356Homeobox domain
SuperFamilySSF466899.84E-162688IPR009057Homeodomain-like
CDDcd000861.26E-152787No hitNo description
PfamPF000466.2E-162885IPR001356Homeobox domain
CDDcd146863.77E-679118No hitNo description
PROSITE profilePS5084826.515155383IPR002913START domain
CDDcd088751.20E-73159375No hitNo description
SuperFamilySSF559612.47E-35164376No hitNo description
SMARTSM002347.6E-37164374IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-20164347IPR023393START-like domain
PfamPF018521.4E-46165373IPR002913START domain
PfamPF086702.9E-50697839IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MAAAVAMPGG SSDSGGFDKI PGMDSGKYVR YTPEQVEVLE RLYIDCPKPS SSRRQQLLRE  60
CPILANIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL  120
VHENAHMRQQ LQNTSLANDT SCESNVTTPP NPIRDASNPS GLLSIAEETF TEFLSKATGT  180
AIDWVQMPGM KPGPDSVGIV AISHGCRGVA ARACGLVNLE PTKVIEILKD RPSWFRDCRS  240
LEVFTMFPAG NGGTIELVYM QMYAPTTLVP ARDFWTLRYT TTTEDGSLMV CERSLSGSGG  300
GPNAASAHQF VRAEMLPSGY LVRPCEGGGS IVHIVDHLDL EARSVPEVLR PLYESSRVVA  360
QKMTTVALRH LRQIAQETSG EVVYALGRQP AVLRTFSQRL SRGFNDAISG FNDDGWSIMG  420
GDGIEDVIVA CNSTKKIRNS SSVGITFGAP GGIICAKASM LLQSVPPAVL VRFLREHRSE  480
WADYNIDAYL ASSLKASVCS LPGLRPMRFS GGQMIMPLAH TVENEEILEV VRLEGQSLTH  540
DEALLSRDIH LLQLCTGIDE KSVGSSFQLV FAPIDEHFPD DAPLISSGFR VIPLDMKTDG  600
VSSGRTLDLA SSLDVGSAAP QASGDASPDD CNLRSVLTIA FQFPYEMHLQ DSVATMARQY  660
VRSVVSAVQR VSMAISPSQS GLNAGQRMLS GFPEAGTLAR WVCQSYHYHL GVELLNQSDE  720
AGEALLKMLW HHPDAILCCS FKEKPMFTFA NKAGLDMLET SLVALQDLTL DKIFDESGRK  780
ALFSDISKLM EQGYVYLPSG VCMSGMGRHV SFDQAVAWKV LGEDSNVHCL AFCFMNWSFV  840
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.76350.0callus| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG791600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2865260.0DQ286526.1 Zea mays rolled leaf 2 (rld2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795001.10.0homeobox-leucine zipper protein HOX10
RefseqXP_025795002.10.0homeobox-leucine zipper protein HOX10
RefseqXP_025795003.10.0homeobox-leucine zipper protein HOX10
RefseqXP_025795004.10.0homeobox-leucine zipper protein HOX10
SwissprotA2XBL90.0HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
TrEMBLA0A2T7CIR60.0A0A2T7CIR6_9POAL; Uncharacterized protein
STRINGPavir.Ib00119.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein