PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG791600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 841aa MW: 92115.2 Da PI: 6.2136 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.2e-18 | 27 | 85 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l+ +++ps ++r++L +++ +++ +q+kvWFqNrR ++k+ Pavir.9NG791600.2.p 27 KYVRYTPEQVEVLERLYIDCPKPSSSRRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 85 5678****************************************************996 PP | |||||||
2 | START | 154.9 | 6.5e-49 | 165 | 373 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +aee+ +e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++++ e+l d++ W +++++ e+ g g Pavir.9NG791600.2.p 165 IAEETFTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVIEILKDRP-SWFRDCRSLEVFTMFPAGngG 253 789999****************************************************7777777777.***********999999999* PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 +++l +++++a+++lvp Rdf+++Ry+ + ++g+++++++S++ p+ +++vRae+lpSg+l++p+++g+s v++v+h dl++r Pavir.9NG791600.2.p 254 TIELVYMQMYAPTTLVPaRDFWTLRYTTTTEDGSLMVCERSLSGSGGGPNaasAHQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAR 343 ********************************************99999999999*********************************** PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqce 205 +++++lr+l++s+++ ++k+++ +l+++++ Pavir.9NG791600.2.p 344 SVPEVLRPLYESSRVVAQKMTTVALRHLRQ 373 *********************999998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-17 | 7 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.289 | 22 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-15 | 24 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.84E-16 | 26 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.26E-15 | 27 | 87 | No hit | No description |
Pfam | PF00046 | 6.2E-16 | 28 | 85 | IPR001356 | Homeobox domain |
CDD | cd14686 | 3.77E-6 | 79 | 118 | No hit | No description |
PROSITE profile | PS50848 | 26.515 | 155 | 383 | IPR002913 | START domain |
CDD | cd08875 | 1.20E-73 | 159 | 375 | No hit | No description |
SuperFamily | SSF55961 | 2.47E-35 | 164 | 376 | No hit | No description |
SMART | SM00234 | 7.6E-37 | 164 | 374 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.1E-20 | 164 | 347 | IPR023393 | START-like domain |
Pfam | PF01852 | 1.4E-46 | 165 | 373 | IPR002913 | START domain |
Pfam | PF08670 | 2.9E-50 | 697 | 839 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 841 aa Download sequence Send to blast |
MAAAVAMPGG SSDSGGFDKI PGMDSGKYVR YTPEQVEVLE RLYIDCPKPS SSRRQQLLRE 60 CPILANIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL 120 VHENAHMRQQ LQNTSLANDT SCESNVTTPP NPIRDASNPS GLLSIAEETF TEFLSKATGT 180 AIDWVQMPGM KPGPDSVGIV AISHGCRGVA ARACGLVNLE PTKVIEILKD RPSWFRDCRS 240 LEVFTMFPAG NGGTIELVYM QMYAPTTLVP ARDFWTLRYT TTTEDGSLMV CERSLSGSGG 300 GPNAASAHQF VRAEMLPSGY LVRPCEGGGS IVHIVDHLDL EARSVPEVLR PLYESSRVVA 360 QKMTTVALRH LRQIAQETSG EVVYALGRQP AVLRTFSQRL SRGFNDAISG FNDDGWSIMG 420 GDGIEDVIVA CNSTKKIRNS SSVGITFGAP GGIICAKASM LLQSVPPAVL VRFLREHRSE 480 WADYNIDAYL ASSLKASVCS LPGLRPMRFS GGQMIMPLAH TVENEEILEV VRLEGQSLTH 540 DEALLSRDIH LLQLCTGIDE KSVGSSFQLV FAPIDEHFPD DAPLISSGFR VIPLDMKTDG 600 VSSGRTLDLA SSLDVGSAAP QASGDASPDD CNLRSVLTIA FQFPYEMHLQ DSVATMARQY 660 VRSVVSAVQR VSMAISPSQS GLNAGQRMLS GFPEAGTLAR WVCQSYHYHL GVELLNQSDE 720 AGEALLKMLW HHPDAILCCS FKEKPMFTFA NKAGLDMLET SLVALQDLTL DKIFDESGRK 780 ALFSDISKLM EQGYVYLPSG VCMSGMGRHV SFDQAVAWKV LGEDSNVHCL AFCFMNWSFV 840 * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7635 | 0.0 | callus| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG791600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ286526 | 0.0 | DQ286526.1 Zea mays rolled leaf 2 (rld2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795001.1 | 0.0 | homeobox-leucine zipper protein HOX10 | ||||
Refseq | XP_025795002.1 | 0.0 | homeobox-leucine zipper protein HOX10 | ||||
Refseq | XP_025795003.1 | 0.0 | homeobox-leucine zipper protein HOX10 | ||||
Refseq | XP_025795004.1 | 0.0 | homeobox-leucine zipper protein HOX10 | ||||
Swissprot | A2XBL9 | 0.0 | HOX10_ORYSI; Homeobox-leucine zipper protein HOX10 | ||||
TrEMBL | A0A2T7CIR6 | 0.0 | A0A2T7CIR6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib00119.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG791600.2.p |