PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG778800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 731aa    MW: 81164.7 Da    PI: 6.3107
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG778800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.26.2e-57561831128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeel+ +yLk+k++gk++el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgk
  Pavir.9NG778800.1.p  56 LPPGFRFHPTDEELIIYYLKRKINGKQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGK 144
                          79****************************.99**************95334455777******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v s +++ vg+kktLv+y+grap+g++tdWvmheyrl
  Pavir.9NG778800.1.p 145 DRKVNS-HRRPVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 183
                          *****9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-6551206IPR003441NAC domain
PROSITE profilePS5100561.38556206IPR003441NAC domain
PfamPF023651.2E-2957183IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MHLPLAKSSL CRLGVAVHIF ASDSLAASRL PSSNKHTFAV RVLRGRAEGA MAPVSLPPGF  60
RFHPTDEELI IYYLKRKING KQIELEIIPE VDLYKCEPWD LPEKSFLPSK DLEWYFFSPR  120
DRKYPNGSRT NRATKSGYWK ATGKDRKVNS HRRPVGMKKT LVYYRGRAPH GSRTDWVMHE  180
YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIIEHYGAV HHPIEQPQWM ASSVDRSPTL  240
DLSSDVRGDD LESSSFSFPT EAPMDSMHGG FGMQMSAGHE DGKWMQFLSE DAFNATNPFF  300
MNPASSSFSC LPSKVDVALE CARLQHRLSL PPLEVEDFPH DVSLDTKTSI LRSNPNEVDI  360
LQEFLSVASA SQELIDGSSS SSYPAEMWPG AGTSSTHYIN ELSSLVELGV TKAKEEVDNF  420
YHMGCIGTSA GFASKSVHVD EPVRLVEIAD MEEELMEDKK QAVENLRGVR LHNNDLGEIV  480
VEGDENNPTE CITQYPISVT ADNSGEAGHL TDPTDARGLD TAPIFSQSQP DDFAIGFDDV  540
NPNTSFDLLY DEKVDVKHGL FISRVGAAKT FFHRVEPSTK VSFHLNPLAS DVSKAIEKFH  600
FPISVTTKVS GRVSIFSKFK ALIRDKFLVT KSSSYQRSLG NKETATVSEL LQIVSLLLTP  660
KEVTGPTTTE QELVKKKAEK VMKPEFGCEG SDAWLVPLSK RSKGISSMFF SGKWAFLTSA  720
LAIRTPGCNH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-55462065168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG778800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793498.10.0uncharacterized protein LOC112874412 isoform X1
RefseqXP_025793499.10.0uncharacterized protein LOC112874412 isoform X1
RefseqXP_025793500.10.0uncharacterized protein LOC112874412 isoform X1
RefseqXP_025793501.10.0uncharacterized protein LOC112874412 isoform X1
RefseqXP_025793502.10.0uncharacterized protein LOC112874412 isoform X1
RefseqXP_025793504.10.0uncharacterized protein LOC112874412 isoform X1
RefseqXP_025793505.10.0uncharacterized protein LOC112874412 isoform X1
TrEMBLK4A6N60.0K4A6N6_SETIT; Uncharacterized protein
STRINGPavir.Ia04558.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66243651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-127NAC domain containing protein 28