PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG776700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 311aa    MW: 32740.4 Da    PI: 8.8819
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG776700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.4e-14121172155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+++  A++Y+k+L+
  Pavir.9NG776700.1.p 121 QRMTHIAVERNRRRLMNDHLASLRSLIPSS---YIPRGDQATVVGGAIDYVKQLE 172
                          79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-15112180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.09E-13119173No hitNo description
Gene3DG3DSA:4.10.280.102.2E-14119175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.154120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-11121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MERMQQLQGP IASSLWAADQ QAAPSTSAAV AAAAHMPFLA LLQGPGVVVE DGQQGRKRTA  60
AFALATDLDL LESCVTQAAA GDPVAFPPAT RAERRRKRPR PRTRAAPPPE KRRKPEEAES  120
QRMTHIAVER NRRRLMNDHL ASLRSLIPSS YIPRGDQATV VGGAIDYVKQ LEQQLVALQA  180
AAAARRGAAG AVGTAATAAA DGVFVSPQYA SYSEARGCCG GVDVEAMAAV GGHVRVRVAG  240
RRWPGRLVRA VAALEDLRLA VLHLAVTSVG QDAVVYCFNL KMEDGCEVAT ADEVAAVVHQ  300
IFAYAGGTCC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193103RRRKRPRPRTR
295101RKRPRPR
395113RKRPRPRTRAAPPPEKRRK
496100KRPRP
5121132RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG776700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798239.11e-158transcription factor bHLH57-like
TrEMBLA0A2S3IUS91e-156A0A2S3IUS9_9POAL; Uncharacterized protein
STRINGSi040271m1e-131(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.14e-35bHLH family protein