PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG775300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 303aa    MW: 33581.9 Da    PI: 6.189
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG775300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.49.9e-082532862154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp+++++++L +++gL+ +q+ +WF N+R +
  Pavir.9NG775300.1.p 253 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 286
                          469*****************************87 PP
2ELK25.43.2e-09207228122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK +L++++++++ ++++E++
  Pavir.9NG775300.1.p 207 ELKIELKQGFKSRIEDVREEIL 228
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-154185IPR005540KNOX1
PfamPF037902.6E-144383IPR005540KNOX1
SMARTSM012561.7E-2396151IPR005541KNOX2
PfamPF037914.0E-1899150IPR005541KNOX2
PROSITE profilePS512139.132207227IPR005539ELK domain
PROSITE profilePS5007111.726227290IPR001356Homeobox domain
SuperFamilySSF466895.99E-16229292IPR009057Homeodomain-like
SMARTSM003893.9E-11229294IPR001356Homeobox domain
CDDcd000864.34E-12230291No hitNo description
Gene3DG3DSA:1.10.10.603.8E-25234291IPR009057Homeodomain-like
PfamPF059201.0E-17247286IPR008422Homeobox KN domain
PROSITE patternPS000270265288IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MQGGGDQGGS LGMDVGFAGG AQCSSSSAAA AAAAAEAEER QLLKGEIAVH PLCEQLVTAH  60
VGCLRVATPI DHLPLIDAQL AQSSGLLHSY AAHHRPFLSP HDKHDLDSFL AQYLMLLCSF  120
REQLQQHVRV HAVEAVMACR EIEQSLQDLT GATLEEGSGA TMSEDEDEPP MLEGALDMGS  180
DGHDMMGFGP LLPTDSERSL MERVRQELKI ELKQGFKSRI EDVREEILRK RRAGKLPGDT  240
TSILKQWWQQ HSKWPYPTED DKAKLVEETG LQLKQINNWF INQRKRNWHN SQTSTLKSKR  300
KR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283301RKRNWHNSQTSTLKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.271310.0callus| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo at 3 days after pollination (DAP). {ECO:0000269|PubMed:10095070}.
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots and flowers, and at lower levels in leaf blades and leaf sheaths. Isoform 2 is expressed in roots and flowers. {ECO:0000269|PubMed:12034492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG775300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9669070.0EU966907.1 Zea mays clone 298091 homeobox protein HD1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793043.10.0homeobox protein knotted-1-like 3
SwissprotQ94LW30.0KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A2S3IUU40.0A0A2S3IUU4_9POAL; Uncharacterized protein
TrEMBLA0A2T7CIP30.0A0A2T7CIP3_9POAL; Uncharacterized protein
STRINGGRMZM2G159431_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-148KNOTTED-like homeobox of Arabidopsis thaliana 7