PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG774200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 602aa    MW: 64285.2 Da    PI: 6.5601
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG774200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.4e-093603971954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Pavir.9NG774200.1.p 360 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 397
                          664459******************************88 PP
2BELL87.81.2e-28221289472
                 BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          e q+ k kL  +leeVd+rY++y+eq++ v++ Feavag  +a+ Yt+lA+++iSrhFr+L+d i+ q+
  Pavir.9NG774200.1.p 221 EQQRLKDKLYIMLEEVDRRYRRYCEQMRPVAGGFEAVAGERAAAAYTALASRTISRHFRSLRDGIVAQL 289
                          778899************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.7E-42140287IPR006563POX domain
PfamPF075265.2E-44146285IPR006563POX domain
PROSITE profilePS5007111.953338401IPR001356Homeobox domain
SMARTSM003896.6E-9341405IPR001356Homeobox domain
CDDcd000863.77E-12341402No hitNo description
SuperFamilySSF466892.01E-17342408IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-28344407IPR009057Homeodomain-like
PfamPF059207.9E-18358397IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MAHDPSLGFA DYFSAAADAT AMEEGAPELY GLHADMEFLA MRGGLAAMPA AAHGHGHSKA  60
VLLDDDGGST NAATMQFLSA GGHQQQHPIH QAPLSLSLCR PDGGGDVGVT LHEHLGGSSR  120
HPQQQWMQHD YSAATQGTQH TAAWHLRSSR FLLPAQQLLQ EFCRLPVESA AKNKRAKQAS  180
TAKPPSQQQQ QQQEDGGGGE GSSSSASWPP SPQIQAMDAL EQQRLKDKLY IMLEEVDRRY  240
RRYCEQMRPV AGGFEAVAGE RAAAAYTALA SRTISRHFRS LRDGIVAQLQ AARKALGENK  300
DDVSSVPGMT RGDTPRLRVL DQCIRHHRAL TQAAMAETHP WRPQRGLPER AVTILRAWLF  360
EHFLHPYPSD VDKHILARQT GLSRSQVSNW FINARVRLWK PMVEEMYVEE MKDGQQQQQQ  420
DDGGGQQSTN PNPSSCSEAA DGGDTGVDRK PTRAQLMHDA GSLASVVNIG GGVSRLDNLG  480
IMDHLDFGSY GGGGQQQAAG GGFGGVSLTL GLQQHDSHDG GGVNIAFGAP PPPPPAHDDD  540
GGGAAGYLFA AAGGQQMDSG VHPGPHGHHA QFGAAAGIDS EAQEHYRSLG AGFHLLRDLA  600
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-16347405563Homeobox protein Meis2
4xrm_B2e-16347405563Homeobox protein Meis2
4xrs_A1e-16347404158Homeobox protein Meis1
4xrs_B1e-16347404158Homeobox protein Meis1
5bng_A1e-16347405159Homeobox protein Meis2
5bng_B1e-16347405159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.40280.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG774200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9579800.0EU957980.1 Zea mays clone 1639087 BEL1-related homeotic protein 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793662.10.0homeobox protein BEL1 homolog
RefseqXP_025793663.10.0homeobox protein BEL1 homolog
RefseqXP_025793664.10.0homeobox protein BEL1 homolog
RefseqXP_025793665.10.0homeobox protein BEL1 homolog
RefseqXP_025793666.10.0homeobox protein BEL1 homolog
RefseqXP_025793667.10.0homeobox protein BEL1 homolog
RefseqXP_025793668.10.0homeobox protein BEL1 homolog
TrEMBLA0A3L6SER00.0A0A3L6SER0_PANMI; Uncharacterized protein
STRINGPavir.Ib00072.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-81TALE family protein