PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG767300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 339aa    MW: 36469.2 Da    PI: 4.8572
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG767300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11170212754
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Pavir.9NG767300.1.p 170 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYVKEL 212
                          79*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.313163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-16168240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-13169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.77E-5170217No hitNo description
PfamPF000103.4E-9170212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-15170230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MELDGETFLD ELMSLRREAA AAAPWQGYPA GGGVMMSDLL FYGADVRSGG MDLPPFQELA  60
PMPPAAPPQH PHEEFNFDCL SEVCNPYRSS VAAPGEAAPG QTLVAPLHDA MVEEETSGDK  120
GQCHGGGRSP TFVFGGGAGV GESTEMAAIR GVSGPHHRSK LHGAPSKNLM AERRRRKRLN  180
DRLSMLRSVV PKISKMDRTS ILGDTIDYVK ELTERIKALE EEIGASPEDL NLLNTLKDSS  240
NSNNEMMVRN STKFDVEQRG NGSTKIEICC STNPGVLLST VSALEVLGLE IEQCVVSCFS  300
DFGMQASCLQ EDGKRQVIST DEIKQALFRS AGYGGRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171178ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.25420.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG767300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9647151e-167EU964715.1 Zea mays clone 281052 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985797.10.0transcription factor bHLH61
SwissprotQ9LSL14e-64BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A3L6SBZ80.0A0A3L6SBZ8_PANMI; Transcription factor bHLH61-like
STRINGPavir.Ia04450.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-66beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]