PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG759600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 384aa    MW: 41301 Da    PI: 9.0683
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG759600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.4e-322578255
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR 
  Pavir.9NG759600.1.p 25 PRLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQMYRN 78
                         8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.6532181IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-312181IPR009057Homeodomain-like
SuperFamilySSF466896.45E-162380IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-242578IPR006447Myb domain, plants
PfamPF002497.5E-102677IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MTMVRTVVGR EKSGGVRQYN RSKVPRLRWT PDLHHCFVHA IHKLGGQDKA TPKRVLQLMG  60
VGGLTISHVK SHLQMYRNMR NDIGMQGSMM QQVPRPDQEH IYGGGGMHVE LCSEDAQRQQ  120
WDHECDGPCC RSPKPRKEPT MPLLLQLHPQ LKRTETRRSR EEEKADYGGS ASPKSLLRGP  180
GPGICEGDGS SPPPRLYCAL AAAGGYNYMR IMQAAMGGMA AAAAAPPRAE PEVVVEQPLQ  240
QGAGIKRQRH EARPAAAAGP PPCSRSKLFT FLGFVVAPGP AAACRDHPFE IAGRTPRLPG  300
SLETPSNMAV VRRGASDPPV GSSGHDDDRG CSLSLSLALD SWSGRCCRHT GEDGSLLSPT  360
TSSAGSRISL DLSLSTLWDP SSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-172680357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-172680357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-172680357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-172680357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG759600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0689101e-107BT068910.1 Zea mays full-length cDNA clone ZM_BFc0191L18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792174.10.0uncharacterized protein LOC112873442
TrEMBLA0A2T8I6K30.0A0A2T8I6K3_9POAL; Uncharacterized protein
STRINGPavir.Ia04483.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76102950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.13e-27G2-like family protein