PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG759100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 300aa    MW: 31836.3 Da    PI: 6.097
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG759100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.6e-08171214755
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          ++ r+RR+ri ++ +eL +l+P         K++ ae+Le+A +++k Lq
  Pavir.9NG759100.1.p 171 AAARQRRKRISEKTAELSRLIPGgH------KMNTAEMLEEAARHVKLLQ 214
                          677*******************955......****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.944164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-9168220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-11168222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.53E-10170217No hitNo description
PfamPF000101.0E-5171214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MALSFHPTTA SLFGYLPAPE GLDMSFLQDV HPEVTDALLG FVYDPLDPAN AALDDLLNLP  60
PHDDDAFLRS PIHGDGDVKV ERHCAKRQRA CGDDAWCGLA RIGAGQQSNG GGNQQVPALP  120
VPEPLNEFVL PLPLPLPPPP PPPQLPEPAA LVRVADSKKA PGNVSQSVQS AAARQRRKRI  180
SEKTAELSRL IPGGHKMNTA EMLEEAARHV KLLQAQVGVL ALMRTVGSTE NEEVPSMAQE  240
QMHALLVRGS VQERLAAEGK CLVPRKLVDA VASDSSVKSN ALVSRDLARF VASLQAGAG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG759100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661333.11e-143uncharacterized protein LOC101765829
TrEMBLA0A3L6THL41e-167A0A3L6THL4_PANMI; Uncharacterized protein
STRINGPavir.Ia04589.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-21bHLH family protein