PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG755800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 33823.2 Da PI: 6.9637 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.9 | 2.1e-49 | 13 | 139 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrFhPt+eel+++yL + v+gkkl++ ++i +++iy+++PwdLp+++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ Pavir.9NG755800.1.p 13 PGFRFHPTEEELLDFYLDRMVHGKKLHF-DIIGTLNIYRHDPWDLPAMAKIGEREWYFFVPRDRKAGSGGRPNRTTERGFWKATGSDRAI 101 9*************************99.99***************99999*************************************** PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ ++++glkktLvfy+grap+g+ktdWvm+eyrl Pavir.9NG755800.1.p 102 RSSadAKRVIGLKKTLVFYQGRAPRGTKTDWVMNEYRL 139 *99777888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-57 | 6 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.156 | 11 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-25 | 13 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MAGVPMEVEQ DLPGFRFHPT EEELLDFYLD RMVHGKKLHF DIIGTLNIYR HDPWDLPAMA 60 KIGEREWYFF VPRDRKAGSG GRPNRTTERG FWKATGSDRA IRSSADAKRV IGLKKTLVFY 120 QGRAPRGTKT DWVMNEYRLP DAGAGAGCGA RAPPPPKEDM VLCKIYRKAT PLKELEQRAS 180 AMEEMQRRSN AQYYMNTARA PQVQAAASAG DDYLSSDDAH DSFLFPSSSS SAPSGDSYSP 240 PMEAKQEVDL AVVQPPAVRH ADLPSLQVPA NHGVLDWMQD LSQLRSPWQD QFFLSPLAHL 300 LS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-47 | 13 | 170 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-47 | 13 | 170 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-47 | 13 | 170 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-47 | 13 | 170 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-47 | 13 | 170 | 22 | 170 | NAC domain-containing protein 19 |
3swm_B | 3e-47 | 13 | 170 | 22 | 170 | NAC domain-containing protein 19 |
3swm_C | 3e-47 | 13 | 170 | 22 | 170 | NAC domain-containing protein 19 |
3swm_D | 3e-47 | 13 | 170 | 22 | 170 | NAC domain-containing protein 19 |
3swp_A | 3e-47 | 13 | 170 | 22 | 170 | NAC domain-containing protein 19 |
3swp_B | 3e-47 | 13 | 170 | 22 | 170 | NAC domain-containing protein 19 |
3swp_C | 3e-47 | 13 | 170 | 22 | 170 | NAC domain-containing protein 19 |
3swp_D | 3e-47 | 13 | 170 | 22 | 170 | NAC domain-containing protein 19 |
3ulx_A | 3e-47 | 7 | 170 | 10 | 170 | Stress-induced transcription factor NAC1 |
4dul_A | 3e-47 | 13 | 170 | 19 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-47 | 13 | 170 | 19 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7233 | 0.0 | callus |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG755800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107090 | 1e-172 | AK107090.1 Oryza sativa Japonica Group cDNA clone:002-121-G12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795753.1 | 0.0 | NAC domain-containing protein 22 | ||||
Swissprot | Q10S65 | 1e-143 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A3L6S6V0 | 0.0 | A0A3L6S6V0_PANMI; NAC domain-containing protein 67-like | ||||
STRING | Pavir.Ia04458.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1770 | 38 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 3e-82 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG755800.1.p |
Publications ? help Back to Top | |||
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