PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG755100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 303aa    MW: 33795.1 Da    PI: 6.9637
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG755100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.92.1e-49131393128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                          pGfrFhPt+eel+++yL + v+gkkl++ ++i +++iy+++PwdLp+++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++
  Pavir.9NG755100.1.p  13 PGFRFHPTEEELLDFYLDRMVHGKKLHF-DIIGTLNIYRHDPWDLPAMAKIGEREWYFFVPRDRKAGSGGRPNRTTERGFWKATGSDRAI 101
                          9*************************99.99***************99999*************************************** PP

                  NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           s+   ++++glkktLvfy+grap+g+ktdWvm+eyrl
  Pavir.9NG755100.1.p 102 RSSadAKRVIGLKKTLVFYQGRAPRGTKTDWVMNEYRL 139
                          *99777888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-576168IPR003441NAC domain
PROSITE profilePS5100555.15611168IPR003441NAC domain
PfamPF023652.4E-2513139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAGVPMEVEQ DLPGFRFHPT EEELLDFYLD RMVHGKKLHF DIIGTLNIYR HDPWDLPAMA  60
KIGEREWYFF VPRDRKAGSG GRPNRTTERG FWKATGSDRA IRSSADAKRV IGLKKTLVFY  120
QGRAPRGTKT DWVMNEYRLP DAGAGAGCGA RAPPPPKEDM VLCKIYRKAT PLKELEQRAS  180
AMEEMQRRSN AQYYMNTARA PQVQAAASAG DDYLSSDDAH DSFLFPSSSS SAPSGDSYSP  240
PMEAKQEADL AVVQPPAVRH ADLPSLQVPA NHGVLDWMQD LSQLRSPWQD QFFLSPLAHL  300
LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-471317019167NO APICAL MERISTEM PROTEIN
1ut4_B3e-471317019167NO APICAL MERISTEM PROTEIN
1ut7_A3e-471317019167NO APICAL MERISTEM PROTEIN
1ut7_B3e-471317019167NO APICAL MERISTEM PROTEIN
3swm_A2e-471317022170NAC domain-containing protein 19
3swm_B2e-471317022170NAC domain-containing protein 19
3swm_C2e-471317022170NAC domain-containing protein 19
3swm_D2e-471317022170NAC domain-containing protein 19
3swp_A2e-471317022170NAC domain-containing protein 19
3swp_B2e-471317022170NAC domain-containing protein 19
3swp_C2e-471317022170NAC domain-containing protein 19
3swp_D2e-471317022170NAC domain-containing protein 19
3ulx_A3e-47717010170Stress-induced transcription factor NAC1
4dul_A3e-471317019167NAC domain-containing protein 19
4dul_B3e-471317019167NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.72330.0callus
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG755100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1070901e-172AK107090.1 Oryza sativa Japonica Group cDNA clone:002-121-G12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795753.10.0NAC domain-containing protein 22
SwissprotQ10S651e-143NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A3L6S6V00.0A0A3L6S6V0_PANMI; NAC domain-containing protein 67-like
STRINGPavir.Ia04458.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.13e-82NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]