PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG745400.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 1063aa    MW: 116651 Da    PI: 5.1705
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG745400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00067952977123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          ++C    C++ F ++ +L+ H r+ +
  Pavir.9NG745400.3.p 952 FQCDidLCDMAFETRAELNAHKRNiC 977
                          899999****************9877 PP
2zf-C2H213.10.0003977999323
                          ET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                          C+   Cgk+Fs++ +LkrH+ +H
  Pavir.9NG745400.3.p 977 CTdeSCGKRFSSHKYLKRHQCVH 999
                          77778***************998 PP
3zf-C2H210.90.001510351061123
                           EEET..TTTEEESSHHHHHHHHHH..T CS
              zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                           ykC+   Cg++F+  s++ rH ++  H
  Pavir.9NG745400.3.p 1035 YKCSapSCGQTFRYVSDYSRHRKKfnH 1061
                           99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035548952974IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.03E-69751012No hitNo description
SMARTSM003552.3975999IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.1969751004IPR007087Zinc finger, C2H2
PROSITE patternPS000280977999IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.9E-59811005IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.30210051034IPR007087Zinc finger, C2H2
SMARTSM003550.003510051029IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-910061029IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028010071029IPR007087Zinc finger, C2H2
SuperFamilySSF576675.84E-1010151057No hitNo description
Gene3DG3DSA:3.30.160.605.8E-1010301057IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.15710351062IPR007087Zinc finger, C2H2
SMARTSM003550.7910351061IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028010371061IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1063 aa     Download sequence    Send to blast
MVNENNLLCS FLKKKSIDNV VLWEPDLLPS STILNSCSFG SKAPEKKSED GCRIESSQCN  60
HKDNSSSDGS ALMTGTQTKC MSASNKSSDA ASASVEKSDA DTDDEDDLPF DLSIDSGSLT  120
CVACGILGYP FMAILQPSRE ALEGISPVHM ERYKLSSEKE KSANVLPCCP ADSNFGSSFV  180
PDRPSCSVDQ PCLATPAEQA KIAHQNVKSY KDVCLPENEL AGPVQQHSDS SYYCRSENTL  240
HSCSNREKSD NNIPMDSLGP KLQQTGRCDI NVQAVESCDG TINWNTSSTF ARPRIFCLQH  300
ALEIEELFEG KGGVHALIIC HSDYTKLKAL AISIAEEIEF QFDCTDVPLA NASKSDLHLI  360
NISIDDEGHE EDGRDWTSQM GLNLKYCAKL RKETSGIQDQ APLSVWGLFS NPSPVSVVPN  420
LKWLCRKART PYRVIGIISS SSTTTIAGEV KPEMNKEIGT TGNVCEDDNS QHIFQQNGLL  480
QPSRLHDSDD RDNRPSCSKE NDHDIHCLID IPIAVAEYPL KHQVCEGPVS VSTRNDIICS  540
SDSQDSSPLA TSPVDVIRFQ GCTQSTELSS SSTFYVQQFL NDESTSVEGS MNCISNHEYL  600
ELQDVTLQCR DECLQVQQDQ EVMGLCNNPH RTSADPGLKE DLAISEEKHG DTVSAALEND  660
EGYAKTSNCS DKTKESATVN QLQNHDAGAV PVKQKSSFNE ITCSADVQCI ITFGCVGSAD  720
VPGSTQPPSV LHDLMSDELQ VDSHHCVVKA IEPESNNSAK HGSLQIDNLI LEDTQAASTT  780
GIPVHDGQSL HAGSNSFDIL LGALAEESKV TDTPGKDEVG KASLTLMTLA SNDHFADEIA  840
EGKIVGVVKT NTTFGATKDN QQVDRPHDSC LSDLVSRSIG NSNRTDIIRY VRRKRKRKKD  900
SQSNTDSSHS QNLGSYVRSP CESLRPRTKP AVVETVEVSA GKKGKRAKVE SFQCDIDLCD  960
MAFETRAELN AHKRNICTDE SCGKRFSSHK YLKRHQCVHS EIRPLKCPWD GCEMTFKWLW  1020
AQTEHVRVHT GERPYKCSAP SCGQTFRYVS DYSRHRKKFN HY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-45951106122132Lysine-specific demethylase REF6
6a58_A1e-45951106122132Lysine-specific demethylase REF6
6a59_A1e-45951106122132Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1891896RRKRKR
2891897RRKRKRK
3892897RKRKRK
4892898RKRKRKK
5892899RKRKRKKD
6894898RKRKK
7894899RKRKKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.205670.0callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG745400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793314.10.0lysine-specific demethylase SE14
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A3L6SH780.0A0A3L6SH78_PANMI; Lysine-specific demethylase SE14-like
STRINGPavir.Ia04207.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.12e-44C2H2 family protein