PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG745400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 1506aa    MW: 166021 Da    PI: 6.1749
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG745400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00113951420123
                           EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                           ++C    C++ F ++ +L+ H r+ +
  Pavir.9NG745400.1.p 1395 FQCDidLCDMAFETRAELNAHKRNiC 1420
                           899999****************9877 PP
2zf-C2H212.50.0004614201442323
                           ET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                           C+   Cgk+Fs++ +LkrH+ +H
  Pavir.9NG745400.1.p 1420 CTdeSCGKRFSSHKYLKRHQCVH 1442
                           77778***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.1E-112364IPR003349JmjN domain
PROSITE profilePS5118313.6052465IPR003349JmjN domain
PfamPF023754.9E-132558IPR003349JmjN domain
PROSITE profilePS5118434.798218387IPR003347JmjC domain
SMARTSM005585.7E-47218387IPR003347JmjC domain
SuperFamilySSF511977.14E-27223383No hitNo description
PfamPF023731.4E-36251370IPR003347JmjC domain
SMARTSM003554813951417IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.2E-514181455No hitNo description
SMARTSM003552.314181442IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.19614181447IPR007087Zinc finger, C2H2
PROSITE patternPS00028014201442IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.8E-514241448IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.30214481477IPR007087Zinc finger, C2H2
SMARTSM003550.003514481472IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-914491472IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014501472IPR007087Zinc finger, C2H2
SuperFamilySSF576678.86E-1014581500No hitNo description
Gene3DG3DSA:3.30.160.608.6E-1014731500IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.15714781505IPR007087Zinc finger, C2H2
SMARTSM003550.7914781504IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014801504IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1506 aa     Download sequence    Send to blast
MSPPAVGGPG ETPVPAWLRG LPRAPEYRPT ESEFADPIGF LSRVEREAAA YGICKVIPPY  60
QRPSRRFVFA HLNRSLTSSS DAANPAVSGS SSSTAPSRPE SAAVFTTRHQ ELGTPRRGRP  120
PPQVLKQVWQ SGEQYTLEQF EAKSRAFSKV HLAGLREPTP LEVESLFWKA SADRPIYIEY  180
ANDVPGSGFA VPPQSRRRKK RRREGDQVEE GEKGSGWRLS GSPWNLQAIA RAPGSLTRFM  240
PDDVPGVTSP MVYIGMLFSW FAWHVEDHEL HSLNFLHTGA PKTWYAVPGD RASELEEVIR  300
VHGYGGNPDR LASLAVLGEK TTLMSPNVLV ARGVPCCRLV QYPGEFVVTF PRAYHIGFSH  360
GFNCGEAANF ATPQWLKFAK EAAVRRAVMN YLPMLSHQQL LYLLAASFII KTPNVLSGIR  420
TSRLRDRRKE ERELLVKQEF LQDMVNENNL LCSFLKKKSI DNVVLWEPDL LPSSTILNSC  480
SFGSKAPEKK SEDGCRIESS QCNHKDNSSS DGSALMTGTQ TKCMSASNKS SDAASASVEK  540
SDADTDDEDD LPFDLSIDSG SLTCVACGIL GYPFMAILQP SREALEGISP VHMERYKLSS  600
EKEKSANVLP CCPADSNFGS SFVPDRPSCS VDQPCLATPA EQAKIAHQNV KSYKDVCLPE  660
NELAGPVQQH SDSSYYCRSE NTLHSCSNRE KSDNNIPMDS LGPKLQQTGR CDINVQAVES  720
CDGTINWNTS STFARPRIFC LQHALEIEEL FEGKGGVHAL IICHSDYTKL KALAISIAEE  780
IEFQFDCTDV PLANASKSDL HLINISIDDE GHEEDGRDWT SQMGLNLKYC AKLRKETSGI  840
QDQAPLSVWG LFSNPSPVSV VPNLKWLCRK ARTPYRVIGI ISSSSTTTIA GEVKPEMNKE  900
IGTTGNVCED DNSQHIFQQN GLLQPSRLHD SDDRDNRPSC SKENDHDIHC LIDIPIAVAE  960
YPLKHQVCEG PVSVSTRNDI ICSSDSQDSS PLATSPVDVI RFQGCTQSTE LSSSSTFYVQ  1020
QFLNDESTSV EGSMNCISNH EYLELQDVTL QCRDECLQVQ QDQEVMGLCN NPHRTSADPG  1080
LKEDLAISEE KHGDTVSAAL ENDEGYAKTS NCSDKTKESA TVNQLQNHDA GAVPVKQKSS  1140
FNEITCSADV QCIITFGCVG SADVPGSTQP PSVLHDLMSD ELQVDSHHCV VKAIEPESNN  1200
SAKHGSLQID NLILEDTQAA STTGIPVHDG QSLHAGSNSF DILLGALAEE SKVTDTPGKD  1260
EVGKASLTLM TLASNDHFAD EIAEGKIVGV VKTNTTFGAT KDNQQVDRPH DSCLSDLVSR  1320
SIGNSNRTDI IRYVRRKRKR KKDSQSNTDS SHSQNLGSYV RSPCESLRPR TKPAVVETVE  1380
VSAGKKGKRA KVESFQCDID LCDMAFETRA ELNAHKRNIC TDESCGKRFS SHKYLKRHQC  1440
VHSEIRPLKC PWDGCEMTFK WLWAQTEHVR VHTGERPYKC SAPSCGQTFR YVSDYSRHRK  1500
KFNHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A5e-73114232376Transcription factor jumonji (Jmj) family protein
6ip4_A5e-73114232376Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195200RRRKKR
213341339RRKRKR
313341340RRKRKRK
413351340RKRKRK
513351341RKRKRKK
613351342RKRKRKKD
713371341RKRKK
813371342RKRKKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.205670.0callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG745400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793314.10.0lysine-specific demethylase SE14
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A3L6SH780.0A0A3L6SH78_PANMI; Lysine-specific demethylase SE14-like
STRINGPavir.Ia04207.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-169C2H2 family protein