PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.9NG729300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 334aa MW: 36675.9 Da PI: 6.6779 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.7 | 8.1e-18 | 113 | 166 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k Pavir.9NG729300.1.p 113 KKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 166 4568999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.4 | 6.3e-41 | 112 | 202 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eqv++LE++Fe +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aLkr++da+k++n++L +++++L++e Pavir.9NG729300.1.p 112 EKKRRLNVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYNALKRQLDAVKADNDALLSHNKKLQAE 201 69**************************************************************************************98 PP HD-ZIP_I/II 91 l 91 + Pavir.9NG729300.1.p 202 I 202 7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-18 | 94 | 169 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.84E-19 | 103 | 170 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.346 | 108 | 168 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-17 | 111 | 172 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.03E-17 | 113 | 169 | No hit | No description |
Pfam | PF00046 | 3.2E-15 | 113 | 166 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.6E-5 | 139 | 148 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 143 | 166 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.6E-5 | 148 | 164 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.2E-13 | 168 | 208 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 334 aa Download sequence Send to blast |
MRPMASNGMA SSPSPFFPPN FLLQMQQTPP DHDPQEHHHH HEHHLPPPLH PHHNPFLPSS 60 QCPSLQDFRG MAPMLGKRPM YGAEVGGGDE ANCGGGGGNE DELSDDGSQA GEKKRRLNVE 120 QVRTLEKNFE LGNKLEPERK LQLARALGLQ PRQVAIWFQN RRARWKTKQL EKDYNALKRQ 180 LDAVKADNDA LLSHNKKLQA EILALKGREA GSELINLNKE TEASCSNRSE NSSEINLDIS 240 RTPPSEGPME PPPSHHQHPS GGGGGMIPFY PSVGGRPAGV DIDQLLHSTS GPKLEQHGNG 300 GIQAPETASF GNLLCGVDEP PPFWPWADHQ HFH* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 160 | 168 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.18594 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.9NG729300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU966490 | 0.0 | EU966490.1 Zea mays clone 294849 homeobox-leucine zipper protein HAT7 mRNA, complete cds. | |||
GenBank | KJ728506 | 0.0 | KJ728506.1 Zea mays clone pUT6811 HB transcription factor (HB102) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796009.1 | 0.0 | homeobox-leucine zipper protein HOX21-like isoform X1 | ||||
Swissprot | Q8S7W9 | 1e-148 | HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21 | ||||
TrEMBL | A0A3L6SDB5 | 0.0 | A0A3L6SDB5_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ia04323.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2289 | 38 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69780.1 | 9e-76 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.9NG729300.1.p |