PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG728600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 86aa    MW: 9677.92 Da    PI: 8.5173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG728600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.4e-0711521454
                         HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
                  HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                         d+iN+ +++L+ llP++s + ++ + s +  L++++ YIksL
  Pavir.9NG728600.1.p 11 DEINELISKLQALLPESSrRRNASRSSASKLLKETCSYIKSL 52
                         68**************6647777889***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.966152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-91071IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-51152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-91167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MSGRRDRISD DEINELISKL QALLPESSRR RNASRSSASK LLKETCSYIK SLHREVDDLS  60
ERLSGLMSTM DNDSPQAEII RSLLR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.52051e-128callus| root| stem
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG728600.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639071e-108BT063907.2 Zea mays full-length cDNA clone ZM_BFc0119B05 mRNA, complete cds.
GenBankEU9645851e-108EU964585.1 Zea mays clone 280170 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985532.11e-51transcription factor ILI3
SwissprotA2XD151e-34ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R471e-34ILI3_ORYSJ; Transcription factor ILI3
TrEMBLA0A3L6SFA52e-50A0A3L6SFA5_PANMI; Transcription factor ILI3
TrEMBLK4AHC52e-50K4AHC5_SETIT; Uncharacterized protein
STRINGPavir.Ia04330.1.p4e-52(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-24bHLH family protein