PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG699800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 735aa    MW: 82309.1 Da    PI: 7.0066
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG699800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS385.56.3e-1183597301374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++ L++cA+av+++d + a++lL+++++++ p+gd +qRla++f+ +L+arla+++s+ly++l +++++    s+ l+a++l+  ++P+
  Pavir.9NG699800.1.p 359 LRTILIHCAQAVAADDRRTANELLKQIRHHSKPNGDGTQRLAHCFADGLEARLAGTGSQLYRKLVAKRAT---ASDMLKAYHLYLAACPF 445
                          5789************************************************************999998...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           ++sh++ Nq+Il  ++++++vHiiDf+i  G+QWp+L++ L++R++gpp lRiTg++ p++g   +e++eetg+rLa++A+++gvpfe+
  Pavir.9NG699800.1.p 446 KRLSHFLSNQTILSMTKNASKVHIIDFGIYFGFQWPCLIRRLSKREGGPPVLRITGIDVPQPGfrPTERIEETGQRLAEYAKKFGVPFEY 535
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +  +a+++e+++ ++++v ++E+++Vn+ ++  +l de+v+++s+r++vL+++++++P ++++   + +++ + F +rf eal ++salf
  Pavir.9NG699800.1.p 536 QG-IASKWETIRADDIKVGKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSIPFFITRFREALFHFSALF 624
                          **.7************************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          d+le+++pr + +r+ +Er l+gre+ nv+aceg++r+er et+++W+ r  +aGF + pl+++++++ak  ++ ++ + + ++e+sg+l
  Pavir.9NG699800.1.p 625 DMLETTVPRGDPQRALLERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQEIVMKAKDKVKDIYHKDFVIDEDSGWL 714
                          *****************************************************************************888********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          ++gWk+r ++++S W+
  Pavir.9NG699800.1.p 715 LQGWKGRIIYAISTWK 730
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.014333710IPR005202Transcription factor GRAS
PfamPF035142.2E-115359730IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MGLDNTYGEL SGMFCGGLSY DGYTDHSSTS DYFRFSDPLP AVVPQMVAEP HSNPSSTVSR  60
ANTETDNPED WEFISDESLN YISRMLLEED IDEKVSMYQA ESAALRAAAK PFYDILGHKF  120
PPSPDHQLIP LSVESPSESG SNSCTQSVAS TVTSSSIGGA VESNRRYDIG GCEQLEAYGG  180
LCGQSYQPLV GPSIDACSAL GVLEDPLITN GRIPEYLFES LPTWDFRRGI EEAQKFLPVS  240
NKLVIGMESS GVARPQEERK DASSNARKAN VLNAKKNRQS GDLDLMEGRN IKQSAFCSDE  300
PDWIEMFDDL LRQTEKKATD LRELMRSEAS KNSQVTQTKG TSGPRTRGRK PTKKDVVDLR  360
TILIHCAQAV AADDRRTANE LLKQIRHHSK PNGDGTQRLA HCFADGLEAR LAGTGSQLYR  420
KLVAKRATAS DMLKAYHLYL AACPFKRLSH FLSNQTILSM TKNASKVHII DFGIYFGFQW  480
PCLIRRLSKR EGGPPVLRIT GIDVPQPGFR PTERIEETGQ RLAEYAKKFG VPFEYQGIAS  540
KWETIRADDI KVGKDEVVIV NCLYRFRNLI DETVAVDSPR NRVLNTIRQV NPAIFIHGIV  600
NGSYSIPFFI TRFREALFHF SALFDMLETT VPRGDPQRAL LERDLFGREA LNVIACEGSD  660
RVERPETYKQ WQVRNLRAGF VQSPLNQEIV MKAKDKVKDI YHKDFVIDED SGWLLQGWKG  720
RIIYAISTWK PKNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-503637308375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.49410.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG699800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279710.0KJ727971.1 Zea mays clone pUT6085 GRAS transcription factor (GRAS67) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794111.10.0scarecrow-like protein 9
TrEMBLA0A3L6S7Z00.0A0A3L6S7Z0_PANMI; Scarecrow-like protein 9
STRINGPavir.Ia03770.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein