PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG697900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 375aa MW: 38194.5 Da PI: 9.9949

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG697900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.5	1.6e-39	79	139	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e alkcprCdstntkfCyynnyslsqPr+fCkaCrryWt+GG+lrnvPvGgg+r+nk+ss Pavir.9NG697900.1.p 79 PEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGTLRNVPVGGGCRRNKRSS 139 67899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-34	69	137	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-33	82	137	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.767	83	137	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	85	121	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MVFPSVPAYL DPPNWNDQQG QHPRASGGGD APLLPVGPAA APNVSGLPSS SSGASAAMAA 60 HARPNSMAER ARLARMPQPE PALKCPRCDS TNTKFCYYNN YSLSQPRHFC KACRRYWTRG 120 GTLRNVPVGG GCRRNKRSSK SSAAAGGSSS SSKPSSSARH LAGPSSMPLP SNSTGPTGAI 180 IPPGLGSFSH HLPFLGSMHH PAPNLGLSFS AGLPPLGVQH MDTVDRFPVA SGGGTTIGAS 240 LEQWRVQQQF PFLTGGGILD LSPASMYQLG LDANRGGSGG SAAAAAAFTL GQTSAATARQ 300 EGSMKVEDSK GQEMSLQRQY MAALRHGSQG VWDGNAGSNG GDGGGNGGST SSWPMDIPGF 360 NSSSTGGGNG SGML*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MVFPSVPAYL DPPNWNDQQG QHPRASGGGD APLLPVGPAA APNVSGLPSS SSGASAAMAA  60
HARPNSMAER ARLARMPQPE PALKCPRCDS TNTKFCYYNN YSLSQPRHFC KACRRYWTRG  120
GTLRNVPVGG GCRRNKRSSK SSAAAGGSSS SSKPSSSARH LAGPSSMPLP SNSTGPTGAI  180
IPPGLGSFSH HLPFLGSMHH PAPNLGLSFS AGLPPLGVQH MDTVDRFPVA SGGGTTIGAS  240
LEQWRVQQQF PFLTGGGILD LSPASMYQLG LDANRGGSGG SAAAAAAFTL GQTSAATARQ  300
EGSMKVEDSK GQEMSLQRQY MAALRHGSQG VWDGNAGSNG GDGGGNGGST SSWPMDIPGF  360
NSSSTGGGNG SGML*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.13028	0.0	stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG697900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791451.1	0.0	dof zinc finger protein DOF5.1-like isoform X2
TrEMBL	A0A2S3IRW0	1e-179	A0A2S3IRW0_9POAL; Uncharacterized protein
STRING	Pavir.J14669.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12301	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	3e-41	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Pavir.9NG697900.1.p