PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG694800.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 28212.8 Da PI: 8.1607 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.4 | 3.3e-05 | 188 | 227 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +R +++ +++ L++l+ + +K + a++L++A +Ik+L+ Pavir.9NG694800.3.p 188 KRSQKLGDKITALQQLVSPY-----GKTDTASVLREAATCIKHLH 227 6889999**********999.....9*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.353 | 177 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-6 | 188 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.71E-4 | 188 | 231 | No hit | No description |
SuperFamily | SSF47459 | 2.88E-9 | 188 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSMLEEIQTA TQGGEDLRSR WWRSRLDRSD TMWNCSAPHP FLLPYGDDYV RCEGSSSPAG 60 AVGLDRILPA EYDLCHSLNL SPSLHGLQTP TLFAMNGSEN YLGIGANPIY SGETRPVFSQ 120 FSCTQPTAAA HLVRWTAAGE TMTGDGSRLR GSKRLKTTTA AATAQDPHHG LRCNVKPTRN 180 QSMKAPCKRS QKLGDKITAL QQLVSPYGKT DTASVLREAA TCIKHLHEQI QILTASYPAI 240 SSPPSEQVPC SGNERCNHA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 155 | RLRGSKRLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG694800.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792107.1 | 1e-137 | uncharacterized protein LOC112873346 | ||||
TrEMBL | A0A3L6TN37 | 1e-142 | A0A3L6TN37_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J38538.1.p | 1e-159 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 2e-15 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG694800.3.p |