PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG694800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 271aa    MW: 29215 Da    PI: 8.0188
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG694800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.43.5e-051571961155
                          HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +R +++ +++  L++l+ +      +K + a++L++A  +Ik+L+
  Pavir.9NG694800.2.p 157 KRSQKLGDKITALQQLVSPY-----GKTDTASVLREAATCIKHLH 196
                          6889999**********999.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.353146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-4157200No hitNo description
Gene3DG3DSA:4.10.280.105.4E-6157205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-9157209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MWNCSAPHPF LLPYGDDYVR CEGSSSPAGA VGLDRILPAE YDLCHSLNLS PSLHGLQTPT  60
LFAMNGSENY LGIGANPIYS GETRPVFSQF SCTQPTAAAH LVRWTAAGET MTGDGSRLRG  120
SKRLKTTTAA ATAQDPHHGL RCNVKPTRNQ SMKAPCKRSQ KLGDKITALQ QLVSPYGKTD  180
TASVLREAAT CIKHLHEQIQ ILTASYPAIS SPPSEQGTGE EEGPTDLRRR GLCLAPLSPD  240
VVQLVVSAEA ALRHRDTADT EDRWRRLAIL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116124RLRGSKRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG694800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792107.11e-177uncharacterized protein LOC112873346
TrEMBLA0A3L6TN370.0A0A3L6TN37_PANMI; Uncharacterized protein
STRINGPavir.J38538.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.52e-20bHLH family protein