PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.9NG694800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 302aa MW: 32909.1 Da PI: 7.78 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.1 | 4.1e-05 | 188 | 227 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +R +++ +++ L++l+ + +K + a++L++A +Ik+L+ Pavir.9NG694800.1.p 188 KRSQKLGDKITALQQLVSPY-----GKTDTASVLREAATCIKHLH 227 6889999**********999.....9*****************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.353 | 177 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.5E-6 | 188 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-9 | 188 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.40E-4 | 188 | 231 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 302 aa Download sequence Send to blast |
MSMLEEIQTA TQGGEDLRSR WWRSRLDRSD TMWNCSAPHP FLLPYGDDYV RCEGSSSPAG 60 AVGLDRILPA EYDLCHSLNL SPSLHGLQTP TLFAMNGSEN YLGIGANPIY SGETRPVFSQ 120 FSCTQPTAAA HLVRWTAAGE TMTGDGSRLR GSKRLKTTTA AATAQDPHHG LRCNVKPTRN 180 QSMKAPCKRS QKLGDKITAL QQLVSPYGKT DTASVLREAA TCIKHLHEQI QILTASYPAI 240 SSPPSEQGTG EEEGPTDLRR RGLCLAPLSP DVVQLVVSAE AALRHRDTAD TEDRWRRLAI 300 L* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 147 | 155 | RLRGSKRLK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.9NG694800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792107.1 | 1e-176 | uncharacterized protein LOC112873346 | ||||
TrEMBL | A0A3L6TN37 | 0.0 | A0A3L6TN37_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J38538.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3758 | 24 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G05710.5 | 3e-20 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.9NG694800.1.p |