PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG687800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 233aa MW: 24684.8 Da PI: 6.8424 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.4 | 7.7e-41 | 63 | 162 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g + +lq+q ++l Pavir.9NG687800.1.p 63 PCAACKILRRRCADGCVLAPYFPPTEPAKFTTAHRVFGASNIIKLLQDLPESSRADAVSSMVYEAEARLRDPVYGCAGAVCRLQKQANEL 152 7***************************************************************************************** PP DUF260 91 kaelallkee 100 k++la++++ Pavir.9NG687800.1.p 153 KVQLARAQAD 162 *****99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.463 | 62 | 163 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.4E-41 | 63 | 160 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MDYGSGSTGT GTTATPPPPP QQQYSSCRSV SPPSRVSSCS PPPAPPPAVQ VVGNAPPTVV 60 LSPCAACKIL RRRCADGCVL APYFPPTEPA KFTTAHRVFG ASNIIKLLQD LPESSRADAV 120 SSMVYEAEAR LRDPVYGCAG AVCRLQKQAN ELKVQLARAQ ADLLNAQAQH ANLLALVCVE 180 MANRRDSHHQ QQHPSPPLVD GGGDFGAAAY HAFYDSDLDS ATWPDHEAQL WT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-41 | 62 | 165 | 10 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-41 | 62 | 165 | 10 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG687800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953937 | 1e-175 | EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004987050.2 | 1e-123 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 3e-63 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A368SSE3 | 1e-122 | A0A368SSE3_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ia03612.1.p | 1e-170 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-54 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG687800.1.p |