PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG672600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 413aa MW: 46229.7 Da PI: 6.9026

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG672600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.1	1.1e-16	148	227	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ evGF +r ++s+++++ + t ++ vC ++gk+++ +++ + r+ C ak+++ ++kdg w+v++ + +HnH+l+ Pavir.9NG672600.1.p 148 EFYNLYSWEVGFGIRYDRSRRNSERT-KTIQDIVCICSGKPNKGTTS---------TLRCRCPAKMRIARSKDGGWHVKEHVADHNHHLS 227 6*****************995555.67889****9987655.........99***************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-13	148	227	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MSGIDDSERV VQAQQMREVS CTNGGIDLNV GAGSELFDCN SGLLDEGIED RHNESTSEVC 60 NGREGCSSVC VDSVFNDGVS GIQPPDAQLT QSWEKRPRLG HIPDEQEETT ENPTALEKAL 120 KGFVIRKHGL VVQPSVGMHF DSMAEAFEFY NLYSWEVGFG IRYDRSRRNS ERTKTIQDIV 180 CICSGKPNKG TTSTLRCRCP AKMRIARSKD GGWHVKEHVA DHNHHLSDTF AEKQQWRSHR 240 HIDLHTKQLI KHLRDNNVNM TKVFSIISSF FGTAGSAPFT KRSVRTLCAK LARDNADDDI 300 GKTMKVFSKI KEEDPDFTYS VELDDECRIK TIIWTNGQSR RHYACFGDII TFDTTYKTNL 360 YDMPFGLFVG INNHFQSIVP DGPAGWGWGW GSPAGAPDGK GRTREWRRIA AG*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MSGIDDSERV VQAQQMREVS CTNGGIDLNV GAGSELFDCN SGLLDEGIED RHNESTSEVC  60
NGREGCSSVC VDSVFNDGVS GIQPPDAQLT QSWEKRPRLG HIPDEQEETT ENPTALEKAL  120
KGFVIRKHGL VVQPSVGMHF DSMAEAFEFY NLYSWEVGFG IRYDRSRRNS ERTKTIQDIV  180
CICSGKPNKG TTSTLRCRCP AKMRIARSKD GGWHVKEHVA DHNHHLSDTF AEKQQWRSHR  240
HIDLHTKQLI KHLRDNNVNM TKVFSIISSF FGTAGSAPFT KRSVRTLCAK LARDNADDDI  300
GKTMKVFSKI KEEDPDFTYS VELDDECRIK TIIWTNGQSR RHYACFGDII TFDTTYKTNL  360
YDMPFGLFVG INNHFQSIVP DGPAGWGWGW GSPAGAPDGK GRTREWRRIA AG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG672600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014753620.1	1e-120	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_024313565.1	1e-120	putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A0Q3H2T0	1e-119	A0A0Q3H2T0_BRADI; Uncharacterized protein
STRING	Pavir.Db00839.1.p	1e-174	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	2e-29	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG672600.1.p