PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG670400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 342aa MW: 37070.2 Da PI: 6.8741

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG670400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.5	2.8e-26	48	116	2	70
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W ++e+l+Li++rrem+++++++k++k+lWe++s++mr++gf rsp++C++kw+nl k++kk + +++ Pavir.9NG670400.1.p 48 WVREETLCLIALRREMDDHFNTSKSNKHLWEAISARMRDQGFDRSPTMCTDKWRNLLKEFKKARSHARH 116 ***************************************************************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.513	40	104	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	7.1E-5	41	106	IPR009057	Homeodomain-like
SMART	SM00717	9.7E-6	44	106	IPR001005	SANT/Myb domain
CDD	cd12203	1.81E-27	46	111	No hit	No description
Pfam	PF13837	2.3E-18	47	140	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MLLSGPPAAP TPPLLLPESS GEDGGHDSSR AAAAAAAGSA PKRRAETWVR EETLCLIALR 60 REMDDHFNTS KSNKHLWEAI SARMRDQGFD RSPTMCTDKW RNLLKEFKKA RSHARHNGGG 120 GSGAGGNGNA KMAYYKEIDD LLKRRGKESG SGGCVASGSG AGKTPTSNSK IESYLQFTTD 180 NGFEDANIPF GPVEANGRSI LSIDDRLEDV RHSLPLTAAD AVATNGVNPW NWRDTSTNGG 240 DNQGTFGGRV ILVKWGDYTT VREAYGTGYA LFWGDYTKRI GIDGTSEAIK EAIKSAFGLR 300 TRRAFWLEDE DEVVRTLDRD MPIGAYTLHL DDGNCKFCSQ L*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MLLSGPPAAP TPPLLLPESS GEDGGHDSSR AAAAAAAGSA PKRRAETWVR EETLCLIALR  60
REMDDHFNTS KSNKHLWEAI SARMRDQGFD RSPTMCTDKW RNLLKEFKKA RSHARHNGGG  120
GSGAGGNGNA KMAYYKEIDD LLKRRGKESG SGGCVASGSG AGKTPTSNSK IESYLQFTTD  180
NGFEDANIPF GPVEANGRSI LSIDDRLEDV RHSLPLTAAD AVATNGVNPW NWRDTSTNGG  240
DNQGTFGGRV ILVKWGDYTT VREAYGTGYA LFWGDYTKRI GIDGTSEAIK EAIKSAFGLR  300
TRRAFWLEDE DEVVRTLDRD MPIGAYTLHL DDGNCKFCSQ L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	9e-39	42	137	1	86	DNA binding protein GT-1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.1811	0.0	callus\| leaf\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG670400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT055522	0.0	BT055522.1 Zea mays full-length cDNA clone ZM_BFc0047D18 mRNA, complete cds.
GenBank	EU357906	0.0	EU357906.1 Zea mays GT-like protein mRNA, complete cds.
GenBank	KJ727951	0.0	KJ727951.1 Zea mays clone pUT6049 trihelix transcription factor (THX25) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794723.1	0.0	trihelix transcription factor GT-1-like isoform X2
Swissprot	Q9FX53	1e-113	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A3L6TF06	0.0	A0A3L6TF06_PANMI; Trihelix transcription factor
STRING	Pavir.J03341.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5631	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-101	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG670400.1.p

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]