PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG668200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 371aa MW: 39542.6 Da PI: 9.0968 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.4 | 1.3e-13 | 161 | 207 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++++++k+L Pavir.9NG668200.1.p 161 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 207 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.022 | 158 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.04E-4 | 161 | 210 | No hit | No description |
Pfam | PF00010 | 4.9E-11 | 161 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-15 | 162 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-15 | 162 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-13 | 164 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MARWRAAACS PVAGSEPDRR ARAFLRPLPA RRRPSGRQQG ASLATVPACE SNEGARRHRG 60 RNEAAPLVPP RAPRSPPQTR PPPPFLADFY ARRALQFAYD HHHSGGASTS SDPLGLGGLY 120 MGHHGGSGMM MPPPFASSPF GDFGRMTAQE IMDAKALAAS KSHSEAERRR RERINAHLAR 180 LRSLLPNTTK TDKASLLAEV IQHVKELKRQ TSEITEEACP LPTESDELTV DASSDEDGRL 240 VVRASLCCDD RADLLPDLIR ALKALRLRAL KAEITTLGGR VKNVLFITGD DSAAGCEGTA 300 GDDQHEEAAA PMSPQHTVAS IQEALRAVME RTASAAAEEP GAAPSGGAGA AGLKRQRTTS 360 LSAILENRSI * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 37 | RRRPSGRQ |
2 | 166 | 171 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG668200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106649 | 0.0 | AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984717.1 | 1e-180 | transcription factor bHLH30 | ||||
Swissprot | Q9S7Y1 | 8e-74 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A1E5UY76 | 1e-180 | A0A1E5UY76_9POAL; Transcription factor bHLH30 | ||||
STRING | Si039730m | 1e-179 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1918 | 38 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG668200.1.p |
Publications ? help Back to Top | |||
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