PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG653400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 309aa MW: 33599.2 Da PI: 4.7537 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.2 | 9.2e-11 | 233 | 273 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Pavir.9NG653400.1.p 233 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 273 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.25 | 223 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-14 | 226 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-12 | 228 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-11 | 229 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.60E-12 | 232 | 277 | No hit | No description |
Pfam | PF00010 | 3.7E-8 | 233 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MESSEASWHS FDPSVAVEDS EAMAQLLAVQ YFGNEQKQPP PTAMYWPGCQ EADQYYGSAP 60 YYMQQPNSGA GCYDHAGYYG SGTVTMTGDF FVPDEQVADP SFMLDLNLDF EDQEGGGDVP 120 AACKRKLEDQ KGESTACTVP KKKSRSTAVP AQKKGRNAQS KKAQKGSCSR GNQEESNDDG 180 NVQCSGNYPS DDDSLEMTAC SNVRSATRKS SSGGGATRAG RGAATDPQSL YARKRRERIN 240 ERLKILQNLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS SDDMWMFAPI AYNGVNVGLD 300 LKISPPQQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG653400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796821.1 | 0.0 | transcription factor bHLH54-like | ||||
TrEMBL | A0A2S3IT63 | 0.0 | A0A2S3IT63_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CG43 | 0.0 | A0A2T7CG43_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia04640.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11680 | 28 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 7e-47 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG653400.1.p |