PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG627700.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 325aa    MW: 35810.5 Da    PI: 6.3227
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG627700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13149193554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h   Er+RR+++N++f  L+++lP+a     +K +Ka+iL +A +Y++ L
  Pavir.9NG627700.2.p 149 HVLSERKRREKLNDSFKALKTVLPPA-----PKKDKASILIRARDYVNTL 193
                          7789*********************9.....7**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-16144211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.64144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.23E-13146198No hitNo description
Gene3DG3DSA:4.10.280.101.3E-15148212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-11149193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-13150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDEQLHQIYR LMDMEDDGHS ELPSSQSSTF PAASSAIPDE TSSLVLGSSN LDTIPNLEEL  60
IACQEGLYGR DQRRNGHARG AFMPYSRHLG TKKKPKPGSG AGGQRAIKAA MSALARMHMV  120
RLAQWQRYQM EMAVAPSTAG SSCGNQLQHV LSERKRREKL NDSFKALKTV LPPAPKKDKA  180
SILIRARDYV NTLKSRLSEL EERNRTLEEL MQHQCDDGGD RDDVSDEQID IEVDINRAAA  240
AEETSQEFHL KIVVRSGYDA MDAVLGILEC LKELGDVRLA TMDTGSRATT LALQMKTSGC  300
DDNFLKESVI KSVKGVMQSK IETA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152157ERKRRE
2153158RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG627700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809512.10.0putative transcription factor bHLH041 isoform X1
TrEMBLA0A2S3H9480.0A0A2S3H948_9POAL; Uncharacterized protein
STRINGPavir.J01638.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-14bHLH family protein