PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG627700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 325aa MW: 35810.5 Da PI: 6.3227 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41 | 3.4e-13 | 149 | 193 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h Er+RR+++N++f L+++lP+a +K +Ka+iL +A +Y++ L Pavir.9NG627700.2.p 149 HVLSERKRREKLNDSFKALKTVLPPA-----PKKDKASILIRARDYVNTL 193 7789*********************9.....7**************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.09E-16 | 144 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.64 | 144 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.23E-13 | 146 | 198 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-15 | 148 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.4E-11 | 149 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-13 | 150 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MDEQLHQIYR LMDMEDDGHS ELPSSQSSTF PAASSAIPDE TSSLVLGSSN LDTIPNLEEL 60 IACQEGLYGR DQRRNGHARG AFMPYSRHLG TKKKPKPGSG AGGQRAIKAA MSALARMHMV 120 RLAQWQRYQM EMAVAPSTAG SSCGNQLQHV LSERKRREKL NDSFKALKTV LPPAPKKDKA 180 SILIRARDYV NTLKSRLSEL EERNRTLEEL MQHQCDDGGD RDDVSDEQID IEVDINRAAA 240 AEETSQEFHL KIVVRSGYDA MDAVLGILEC LKELGDVRLA TMDTGSRATT LALQMKTSGC 300 DDNFLKESVI KSVKGVMQSK IETA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 157 | ERKRRE |
2 | 153 | 158 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG627700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809512.1 | 0.0 | putative transcription factor bHLH041 isoform X1 | ||||
TrEMBL | A0A2S3H948 | 0.0 | A0A2S3H948_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J01638.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 1e-14 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG627700.2.p |