PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG627700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 362aa    MW: 39667.7 Da    PI: 5.8712
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG627700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-13186230554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h   Er+RR+++N++f  L+++lP+a     +K +Ka+iL +A +Y++ L
  Pavir.9NG627700.1.p 186 HVLSERKRREKLNDSFKALKTVLPPA-----PKKDKASILIRARDYVNTL 230
                          7789*********************9.....7**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-16181248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.64181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-13183235No hitNo description
Gene3DG3DSA:4.10.280.101.5E-15185249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-11186230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-13187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDGCSIWSPF QSGGIGEGAA SERSRGSALQ QEHDLPIMDE QLHQIYRLMD MEDDGHSELP  60
SSQSSTFPAA SSAIPDETSS LVLGSSNLDT IPNLEELIAC QEGLYGRDQR RNGHARGAFM  120
PYSRHLGTKK KPKPGSGAGG QRAIKAAMSA LARMHMVRLA QWQRYQMEMA VAPSTAGSSC  180
GNQLQHVLSE RKRREKLNDS FKALKTVLPP APKKDKASIL IRARDYVNTL KSRLSELEER  240
NRTLEELMQH QCDDGGDRDD VSDEQIDIEV DINRAAAAEE TSQEFHLKIV VRSGYDAMDA  300
VLGILECLKE LGDVRLATMD TGSRATTLAL QMKTSGCDDN FLKESVIKSV KGVMQSKIET  360
A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194ERKRRE
2190195RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG627700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809512.10.0putative transcription factor bHLH041 isoform X1
TrEMBLA0A2S3H9480.0A0A2S3H948_9POAL; Uncharacterized protein
STRINGPavir.J01638.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-14bHLH family protein