PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG620400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 341aa    MW: 38297.8 Da    PI: 7.8467
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG620400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding347e-11142185447
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          WT+ E+ +++++   +G g+Wk I+r++ ++Rt+ q+ s+ qky
  Pavir.9NG620400.1.p 142 WTKLEHRQFLRGLCVYGRGDWKNISRHFVTTRTPVQVSSHAQKY 185
                          *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-10133189IPR009057Homeodomain-like
PROSITE profilePS5129413.966134190IPR017930Myb domain
SuperFamilySSF466891.25E-15136190IPR009057Homeodomain-like
SMARTSM007172.5E-9138188IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.1E-12139188IPR006447Myb domain, plants
CDDcd001679.81E-8142186No hitNo description
PfamPF002495.5E-8142185IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDPKFNGEWS ASEIRMVKSF IASHNASNNS NDMNKKHNNI VNQLQAWFPL KEKHQVITLY  60
VELVVEMMRQ PGQSGNQSMV AVNNLVNDNY GIPVEDSTMN IMNMPLASLT GKKPEAMRVV  120
EEAPQRQVIV PQQERRQKGR LWTKLEHRQF LRGLCVYGRG DWKNISRHFV TTRTPVQVSS  180
HAQKYFRRME QRTNEKQRYS INDVGLYDDE PRAPNNSSSW KPLTFAGANN PNGYGSSNEL  240
PTMNNLAHAW SSPLPTMNNL AHAWSSPLPT MNNLAHAWSS PFLYSDGQAS SSQATTWTGQ  300
QLGASSSTAL APEGAGSQIA WTGDQQGDFI PEQWMDFDDI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG620400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806560.11e-167transcription factor SRM1-like
TrEMBLA0A2S3H8110.0A0A2S3H811_9POAL; Uncharacterized protein
STRINGPavir.J00203.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-24MYB family protein