PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG600800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 353aa MW: 38944.9 Da PI: 6.7542 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.3 | 4.8e-56 | 20 | 147 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdee++++yL++k+ +++++ vi evd++k+ePw+Lp ++k +ekewyfF+++d+ky+tg+r+nrat++gyWkatgkdk Pavir.9NG600800.1.p 20 LPPGFRFHPTDEEIITHYLTHKALNNRFTS-GVIGEVDLNKCEPWHLPGRAKMGEKEWYFFCHKDRKYPTGTRTNRATETGYWKATGKDK 108 79*************************999.99***************99999************************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 e+++ +g lvg+kktLvfy+grap+gekt Wvmhe+rle Pavir.9NG600800.1.p 109 EIFRGRGILVGMKKTLVFYRGRAPRGEKTGWVMHEFRLE 147 ************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.94E-63 | 15 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.388 | 20 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-28 | 21 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MSEVSVINQA EVEDAGQLDL PPGFRFHPTD EEIITHYLTH KALNNRFTSG VIGEVDLNKC 60 EPWHLPGRAK MGEKEWYFFC HKDRKYPTGT RTNRATETGY WKATGKDKEI FRGRGILVGM 120 KKTLVFYRGR APRGEKTGWV MHEFRLEGKL PHPLPRSAKD EWAVSKVFNK ELAARAEPMA 180 AAGAELERIG SLGFISELLD SAELPPLMDP SFGGEVDEVV DFKGASTSAH AAAPGASYLP 240 VKMEKHAPLQ YHNHQQQQAP PMFYSSQYFS LPAVNSGDLT PAIRRYCKAE QVASGQTTSV 300 LSPSRETGLS TDPNAGSGCA EISSAATPLS SSHQFPHDLD DPLLHVADFW KY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-52 | 11 | 175 | 11 | 173 | NAC domain-containing protein 19 |
3swm_B | 5e-52 | 11 | 175 | 11 | 173 | NAC domain-containing protein 19 |
3swm_C | 5e-52 | 11 | 175 | 11 | 173 | NAC domain-containing protein 19 |
3swm_D | 5e-52 | 11 | 175 | 11 | 173 | NAC domain-containing protein 19 |
3swp_A | 5e-52 | 11 | 175 | 11 | 173 | NAC domain-containing protein 19 |
3swp_B | 5e-52 | 11 | 175 | 11 | 173 | NAC domain-containing protein 19 |
3swp_C | 5e-52 | 11 | 175 | 11 | 173 | NAC domain-containing protein 19 |
3swp_D | 5e-52 | 11 | 175 | 11 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.10258 | 0.0 | leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG600800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956395 | 0.0 | EU956395.1 Zea mays clone 1562064 GRAB2 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984514.1 | 0.0 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FK44 | 2e-98 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A368SRF4 | 0.0 | A0A368SRF4_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J13094.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1862 | 38 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 3e-97 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG600800.1.p |
Publications ? help Back to Top | |||
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