PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG583700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 132aa    MW: 15371.4 Da    PI: 8.4782
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG583700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1514.8e-1637108274
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 
                          f+ +Y+ + GF+vrk++++k++ +g+it+ +fvC +eg+r  +k++ + ++ +raetrt+C+ ++++k+++++
  Pavir.9NG583700.1.p  37 FWLRYGGHRGFEVRKRYTNKRESDGKITSCKFVCANEGHRVADKRD-HLTKCPRAETRTDCQVHMNLKLDRKK 108
                          99****************************************9999.999******************99744 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1137108IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MEEEGNKADN ESNAAILPDF IPQVGMEFGS SDEAWAFWLR YGGHRGFEVR KRYTNKRESD  60
GKITSCKFVC ANEGHRVADK RDHLTKCPRA ETRTDCQVHM NLKLDRKKEI FKYLMCFWNT  120
ITNYTFLKSY T*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.440740.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG583700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314647.14e-52protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A453SK484e-50A0A453SK48_AEGTS; Uncharacterized protein
STRINGOS10T0571900-005e-45(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-10FAR1-related sequence 5