PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG576100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 278aa    MW: 29459.2 Da    PI: 10.3509
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG576100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.21.1e-09921321355
                  AP2  13 grWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +Wv+e+r+p   g    r +lg++g ae  a+a++aa++ l+g
  Pavir.9NG576100.1.p  92 CQWVCEVRVP---GrGGCRLWLGTYGAAEATARAHDAAMLGLRG 132
                          56*******8...5334***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.4675144IPR001471AP2/ERF domain
SMARTSM003800.001185150IPR001471AP2/ERF domain
PfamPF008472.9E-591132IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-892144IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.8E-1693146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MRNPTQINST EVTNKKIISF RVPAARGKAA DGLHALRSSR PGARRPMACM LAACSKRRPP  60
RNQAPGDRRP THAAPSQGLS LEEERGHAGG RCQWVCEVRV PGRGGCRLWL GTYGAAEATA  120
RAHDAAMLGL RGACGAAARR LNFADSAWLL DVPAHAALRG AEGGILRRAV ARAVEEFLRT  180
RPAAEDAMSA TSEPPPAAED DDDASSDKSD DGTASPFKMD DVLSDMGGQL ELALRRWQRT  240
AVRASVRSGS TPPTPTGSGS YNAGRGRRLA LEHELLP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG576100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822046.11e-49dehydration-responsive element-binding protein 1I-like
SwissprotQ0J3Y67e-32DRE1I_ORYSJ; Dehydration-responsive element-binding protein 1I
TrEMBLA0A3L6PRW93e-61A0A3L6PRW9_PANMI; Dehydration-responsive element-binding protein 1I
STRINGPavir.J03891.1.p3e-32(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261