PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG571700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 331aa MW: 38054.6 Da PI: 5.1914

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG571700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.7	2.3e-19	12	98	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 f+ +Y+ + GF+v+k++ +k+ ++g++ + ++vC +eg+r+e+k+ + ++ +raetrt+C+ + v +++ +g ++v++l+leHnH l Pavir.9NG571700.1.p 12 FWISYGGQKGFEVSKRYANKR-KDGTVRSCRYVCANEGHRSEDKRG-HLTKCPRAETRTDCQVLIGVVLDQeKGIYKVADLVLEHNHIL 98 999***********99887.8888*************999.999*************99999*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-14	12	98	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MEFKNIDEAW MFWISYGGQK GFEVSKRYAN KRKDGTVRSC RYVCANEGHR SEDKRGHLTK 60 CPRAETRTDC QVLIGVVLDQ EKGIYKVADL VLEHNHILHL PETSHLMASQ RKISELQGFE 120 IETADDAGIR PKAAHDLASL QVGGSCNLSY TLRDHKNYLR GKHQREIAYG QAGSMLMYFQ 180 DKIAENLSFQ YALQLDEEEQ IANIFWVDAK MLIDYAYFGD VVSFDTTFGT NKESRPFGVF 240 VGFNHFRETM NAAKHLNEAD EEESNTSPKQ KAEDNEKEPS ILADFSACMF EYEDEETFEQ 300 AFNTIRAKAS KQSWLDSIYM VKEKWAECYW *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG571700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC078840	0.0	AC078840.6 Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence.
GenBank	AC084023	0.0	AC084023.8 Oryza sativa Japonica Group cultivar Nipponbare chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBank	CP012618	0.0	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025876512.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_025876513.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	B9G6I4	0.0	B9G6I4_ORYSJ; Uncharacterized protein
STRING	OS10T0571900-00	1e-160	(Oryza sativa)
STRING	Sb10g022742.1	1e-160	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-38	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.9NG571700.1.p