PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG563900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 527aa    MW: 57266.6 Da    PI: 6.8666
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG563900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.93.4e-11219248433
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                           k err+++NReAAr+sR+RKka++++Le+
  Pavir.9NG563900.1.p 219 AKTERRLAQNREAARKSRLRKKAYVQQLET 248
                          799*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.7E-8216292IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-7218262No hitNo description
PROSITE profilePS502179.243218262IPR004827Basic-leucine zipper domain
PfamPF001704.8E-8219249IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-7220263No hitNo description
PROSITE patternPS000360223238IPR004827Basic-leucine zipper domain
PfamPF141441.7E-29301375IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MVHGEESSWR MERAALPLNP AFAYGVQLQH HAAAAPPPSC FLDIQPAAPA SAYFGFVELE  60
EALIHGGGAS ASTGGCVDPG VITRSDVAAQ TKPAAAGYLA GAGAGRPPTL EIFPSWPMRH  120
QQQLHSGNSQ LVGSTTDSSS AQNTMSQMEL VSPASPAPGQ EVMMVTTDDY SYKPGLAAAA  180
PPPSFQQHHP PPLQLHGGGD HDKRKQGGST RKDGKLVDAK TERRLAQNRE AARKSRLRKK  240
AYVQQLETSR IRLQQVEHEL QRARSQGLFV GGCSAAGGMG SGAAMFDMEY ARWLDDDSKR  300
LAELRGGLQA HLLDGNLGLI VEECMQHYDE LFQLKAALAR ADVFHLLTGS WATPAERCFF  360
WMGGFRPSEL LKILIPQLDP LTEQQLLGIC NLQQSSEQAE EALAQGLHQS LADTVAAGTL  420
NDGAAAPNYM SLMAVALEKL ASLESFYQQA DNLRQQTLHQ MRRILTTRQA ARCFLSIGEY  480
YRRLRALSNL WASRPRDNFI GAESLSPTAT ELQVMHQQQQ NQFSGF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.58391e-136callus
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expression in meristem/developing ligule regions. {ECO:0000269|PubMed:9490265}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269|PubMed:9490265}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG563900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0369490.0AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001104893.10.0transcription factor LG2
SwissprotO490670.0LG2_MAIZE; Transcription factor LG2
TrEMBLA0A2T7DE750.0A0A2T7DE75_9POAL; Uncharacterized protein
STRINGGRMZM2G060216_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38093166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-135bZIP family protein
Publications ? help Back to Top
  1. Walsh J,Freeling M
    The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex.
    Plant J., 1999. 19(4): p. 489-95
    [PMID:10504571]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]