PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG554900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 309aa    MW: 33270.5 Da    PI: 8.0222
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG554900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd+ lv +v+++G+g+W+++++  g+ R+ k+c++rw +yl
  Pavir.9NG554900.1.p 14 KGPWTPEEDLVLVSYVQEHGPGNWRAVPASTGLARCSKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding47.34.9e-1567112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg ++ +Ed l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Pavir.9NG554900.1.p  67 RGGFSDQEDRLIAHLQALLGNR-WAAIASHLP-DRTDNDVKNYWNTHL 112
                          7889******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.405965IPR017930Myb domain
SuperFamilySSF466898.44E-3011108IPR009057Homeodomain-like
SMARTSM007174.8E-131363IPR001005SANT/Myb domain
PfamPF002491.8E-161461IPR001005SANT/Myb domain
CDDcd001672.03E-111661No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2365116IPR009057Homeodomain-like
SMARTSM007173.6E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129419.12666116IPR017930Myb domain
PfamPF002493.8E-1467112IPR001005SANT/Myb domain
CDDcd001676.35E-1170110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGRPPCCDKE GVKKGPWTPE EDLVLVSYVQ EHGPGNWRAV PASTGLARCS KSCRLRWTNY  60
LRPGIRRGGF SDQEDRLIAH LQALLGNRWA AIASHLPDRT DNDVKNYWNT HLKKKLLLQH  120
HQHQQQCAPS TPSPPPNKGR WELRLQTDID LARRALRDAL ASPPAGTMIT GATAPAPPPL  180
PAEPAPAYAL TARDVSCMQD GWAPPTPGKK SGSPATPPQP VAAESASGST SELATKCSAA  240
SISSASNNKR AAPVAENQLF VREEEKAAAG EVRLSEIESW LLEDDGCGEQ KPAHDGTLLD  300
AALHRFGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-27141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-261211625128MYB TRANSFORMING PROTEIN
1mse_C8e-27141164105C-Myb DNA-Binding Domain
1msf_C8e-27141164105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG554900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9628481e-171EU962848.1 Zea mays clone 246006 myb transcription factor MYB30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794825.11e-156transcription factor MYB30-like
TrEMBLA0A2T7CC451e-154A0A2T7CC45_9POAL; Uncharacterized protein
STRINGGRMZM2G098179_P011e-120(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.25e-70myb domain protein 96