PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG554400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 276aa MW: 29909.5 Da PI: 6.4025 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.6 | 3e-05 | 37 | 86 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + erE+ Rd++N+ f eL +l ++ + + Ka iL+ +++ +++L Pavir.9NG554400.1.p 37 RKVHKAEREKLKRDHLNDLFIELGNMLETD----RQNNGKACILTDTTRILRDL 86 677889***********************8....57788888998888887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.741 | 36 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.05E-10 | 36 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-8 | 36 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.03E-4 | 37 | 91 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MVPSERGSVA TAVSTAAADK LVHGPITGKK CKKAAPRKVH KAEREKLKRD HLNDLFIELG 60 NMLETDRQNN GKACILTDTT RILRDLLVQV ESLRKEHSNL QNETHYVAIE RNELQDENGV 120 LRKEISELQD ELRMRTSGNP AGWGHGTAGS NPSVPNPASA VFSSQQAMQP PTVASTIFPM 180 QQPLAPSAVI EQSYATPPPL ELKLFPGAVS VDVCETSEDQ EAPNHVARPQ ARYPTQSASW 240 PVTLFSGLPR MEDEQCSSST TSSSSSSKEA STGRD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.11618 | 0.0 | callus| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG554400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796613.1 | 1e-176 | transcription factor BHLH062-like | ||||
Swissprot | Q69V10 | 1e-85 | BH062_ORYSJ; Transcription factor BHLH062 | ||||
TrEMBL | A0A3L6TI20 | 1e-178 | A0A3L6TI20_PANMI; Transcription factor bHLH47-like | ||||
STRING | Pavir.Ia03149.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2481 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 3e-28 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG554400.1.p |
Publications ? help Back to Top | |||
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