PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG553200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 273aa    MW: 29590.1 Da    PI: 6.4025
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG553200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.4e-053786154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         r++ + erE+  Rd++N+ f eL  +l  +     + + Ka iL+ +++ +++L
  Pavir.9NG553200.1.p 37 RKVHKAEREKLKRDHLNDLFIELGNMLEAD----RQNNGKACILTDTTRILRDL 86
                         677889*********************997....57788888988888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.4933686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1036105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-836105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.79E-43791No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVPSERGSVA TAVSTAAADK LVHGPITGKK CKKAAPRKVH KAEREKLKRD HLNDLFIELG  60
NMLEADRQNN GKACILTDTT RILRDLLVQV ESLRKEHSNL QNETHYVAIE RNELQDENGV  120
LRKEISELQD ELRMRTSGNP AGWGHGTAGS NPSVPNPASA VFSSQQAMQP PTVASTIFPM  180
QQPLAPSAVI EQSYATPPPL ELKLFPGAAS VDVCETSEDQ EAPNHVARPQ ARYPTQSASW  240
PVTLFSGLPR MEDEQCSSST TSSSKEASTG RD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.116180.0callus| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG553200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796613.11e-179transcription factor BHLH062-like
SwissprotQ69V103e-88BH062_ORYSJ; Transcription factor BHLH062
TrEMBLA0A3L6TI200.0A0A3L6TI20_PANMI; Transcription factor bHLH47-like
STRINGPavir.Ia03149.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.32e-28bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Wu H,Ye H,Yao R,Zhang T,Xiong L
    OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
    Plant Sci., 2015. 232: p. 1-12
    [PMID:25617318]