PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG541400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 351aa    MW: 37357.6 Da    PI: 5.8811
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG541400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13178223555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR++i++ f eL  ++P +     kK++Ka+iL +A+ Y+k+Lq
  Pavir.9NG541400.1.p 178 HIMAERKRREKIKQLFVELSAVIPGL-----KKMDKATILSEAMMYVKKLQ 223
                          899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.862173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-16176236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-16177229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-10178223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.32E-14178226No hitNo description
SMARTSM003531.1E-12179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.338279350IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEDYSSLFVQ WVTNTLELER PAPAVVDDVC GQATTFFPSP QPLPEASSYA DEMVQKLLIT  60
GAHAAAISSW SSTDTTHDSG GRVLAPRHQA VEGEGHGVWP PSAWHVPTSS TNDLPGSWNF  120
SAVPAEPPGD GTPETAAATA RGMPEQAAYG SLTPPIRRAG LKSTGSKSSS SAPYTHDHIM  180
AERKRREKIK QLFVELSAVI PGLKKMDKAT ILSEAMMYVK KLQEKLNAWE AVSGVVLVKK  240
KPCYATPEGE AGSPLGAPAT LRKNPLPEIE VQLSGNDVMV RVLCENGKGV VARVLAEVED  300
LHLSIVGASV MPSPVCTLSI TIRAKLEAAF MVTAEEVIDR VGTALSQQQI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186ERKRRE
2182187RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG541400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071905e-45AK107190.1 Oryza sativa Japonica Group cDNA clone:002-125-A03, full insert sequence.
GenBankHQ8588625e-45HQ858862.1 Oryza sativa Japonica Group isolate UT1671 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984147.31e-135transcription factor bHLH18-like
TrEMBLA0A368SPZ41e-134A0A368SPZ4_SETIT; Uncharacterized protein
STRINGPavir.Ia03339.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-39bHLH family protein