PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG524700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 164aa MW: 19209.1 Da PI: 4.479

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG524700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.6	1.3e-15	82	158	1	68
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkv 68 kf+n Y++ +GF v+++++ ++ krn+ei++ t++C+++g ++++k+ + er t++ +t+Ck ++++ Pavir.9NG524700.1.p 82 KFFNYYGYLAGFAVVIAHHARTqsrKRNNEIIRITYKCNRQGMQDTSKEGntqeeeITAERDTNVLVKTNCKYCMVI 158 6****************99988899*************999988777776677788********99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.1E-14	82	158	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MGDNNLNFAQ VENLDPTEEE LEEHWYIDLF KRIEHKQLEE EDVENFLENE RIASSQEKVS 60 EIDSQYVPHE GMEFCTSSED HKFFNYYGYL AGFAVVIAHH ARTQSRKRNN EIIRITYKCN 120 RQGMQDTSKE GNTQEEEITA ERDTNVLVKT NCKYCMVIVG YHD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG524700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.J23310.1.p	1e-119	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP23066	2	4

Link Out ? help Back to Top
Phytozome	Pavir.9NG524700.1.p