PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG524000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 402aa MW: 43422.4 Da PI: 6.8661 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0011 | 256 | 278 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp Cg+ F + L H +H Pavir.9NG524000.1.p 256 YECPGCGRAFQSYQALGGHRASH 278 99********9999888888777 PP | |||||||
2 | zf-C2H2 | 10.8 | 0.0015 | 337 | 359 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F + L H r+H Pavir.9NG524000.1.p 337 FECPICFKVFGSGQALGGHKRSH 359 89**************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 8.1E-5 | 14 | 36 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.6 | 14 | 36 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.46E-7 | 14 | 36 | No hit | No description |
PROSITE profile | PS50157 | 9.286 | 14 | 37 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 16 | 36 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.46E-7 | 251 | 278 | No hit | No description |
Pfam | PF13912 | 8.0E-11 | 255 | 280 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.21 | 256 | 278 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.492 | 256 | 283 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 258 | 278 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.598 | 337 | 359 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.2E-11 | 337 | 360 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 337 | 359 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 339 | 359 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MGDAAVLSSS ATRHSCKVCR KGFPCGRSLG GHMRSHSLAE VETAVEDDAD DNGEEQQQQR 60 RGSDCLMVPA AGGYGLRENP KKTRRLSGLD GGGRQDECGH GDRGELLPPC APEVGRERRH 120 APGAGMEAEA EREQEDAMLI PTEPAVGLMP APRRRRRSMR VPAPAPPPAF DKEPEDVALC 180 LIMLSRDILH RRDSTVAGAK YSPEKGRRRR RDYHHDTDSD DASALFQYAD VEISTKTNNK 240 RKPNRSLAGD EKRARYECPG CGRAFQSYQA LGGHRASHKR INSNCSIAKV APDQAELSVE 300 TNASFNTASP DADYAADVAH NTAVVALKAK PQKAIKFECP ICFKVFGSGQ ALGGHKRSHL 360 IAGELYERAH ADGDAGIDEP EQPMIADGFL DLNLPAPGAE D* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG524000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792036.1 | 0.0 | zinc finger protein ZAT4-like | ||||
TrEMBL | A0A3L6TTF0 | 0.0 | A0A3L6TTF0_PANMI; Zinc finger protein ZAT4-like | ||||
STRING | Pavir.Ia03028.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3861 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 5e-23 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG524000.1.p |