PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG488900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 593aa    MW: 62005.9 Da    PI: 7.0934
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG488900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.3e-093463831954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Pavir.9NG488900.1.p 346 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 383
                          664459******************************88 PP
2BELL93.22.5e-30202272272
                 BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           +elq+ kakL  +l+eV++rY++y+eq+++v++sFeavag  +a+ Yt+lA+++iS+hFr+L+d +a q+
  Pavir.9NG488900.1.p 202 AAELQRLKAKLYAMLQEVERRYRRYREQMRAVAGSFEAVAGERAAAAYTRLASRTISKHFRSLRDGVAAQL 272
                          5799****************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.2E-45137270IPR006563POX domain
PfamPF075262.6E-41143268IPR006563POX domain
PROSITE profilePS5007112.228324387IPR001356Homeobox domain
CDDcd000861.45E-12327388No hitNo description
SMARTSM003893.0E-9327391IPR001356Homeobox domain
SuperFamilySSF466891.71E-17328395IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-28330393IPR009057Homeodomain-like
PfamPF059207.8E-18344383IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MAHDPSLAYA DYFAAAGGVA TLVPEVDAAG EDEGHLYGGV HAHHHGLEMF GARGLVPGAT  60
VAAAAHGKAA AALGDFGLGA EHQYRLLGHS QQAPLTSLSL HGSAEAASLA LHHHQLGGGG  120
GALRQHQPAA WPQQPQQGGA WHLRGSRFLR PTQQLLHEFC GLPVEATSAV ASKPPAKPGS  180
EDRAGEGSSS SAPSAQIQAM DAAELQRLKA KLYAMLQEVE RRYRRYREQM RAVAGSFEAV  240
AGERAAAAYT RLASRTISKH FRSLRDGVAA QLQAVRRALG EKDPDGGAPG AAGMANKGET  300
TPRLRVLDQC LRQHRAYQAG VLESQPWRPQ RGLPERAVSI LRAWLFEHFL HPYPSDVDKH  360
ILARQTGLSR SQVSNWFINA RVRLWKPMVE EMYAEEMKGP QEGACSNANA AANDSSSANP  420
SGGYGGAEDG GGERKPTRAQ LQVHDDAGSL ASVVSIGSGG RGPQNIDFGM MDGHLDFGAY  480
GDAAHAAGAG HGFGGGVSLT LGLQQHAGDP HGGVNVAFAA AQSSAAAHEF LFMAGGEQHQ  540
QQQMVAGGGV VHGHQGQFGA GMDGDDAVAA SHYHHRGISA ATGFQLLHDL AG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-17333391563Homeobox protein Meis2
4xrm_B2e-17333391563Homeobox protein Meis2
5bng_A2e-17333391159Homeobox protein Meis2
5bng_B2e-17333391159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.961e-163root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG488900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570600.0EU957060.1 Zea mays clone 1581614 bell-like homeodomain protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793881.10.0homeobox protein BEL1 homolog
TrEMBLA0A2T7CAK40.0A0A2T7CAK4_9POAL; Uncharacterized protein
STRINGPavir.Ia02908.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.16e-67TALE family protein