PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG474600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 489aa    MW: 50267.2 Da    PI: 6.5952
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG474600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.44.1e-16297342555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hne Er+RRdriN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  Pavir.9NG474600.1.p 297 HNESERKRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 342
                          *************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.025292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-20295365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-18297353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13297342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.41E-18297346No hitNo description
SMARTSM003531.2E-18298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MNQCVPSWDL DDPALVAAGG GGLSNHPRTA AGSAHHRGGA AAPAGVTAAG GAFAPAVVPM  60
ADQYYEVAEL TWEKGNISSH GLLNRPPPNK YHHQPAASHL QDIGGGSGAA GDRETLEAVV  120
GEAAARSHFL STPAVRLAPW GGVGAGAAVA RAGADALVPC AARADDEAAE GADASRRKRA  180
RVVGEDGLLV CASQGSAAPG RRGDSALITL DGCGTGADDV CGFTTATNNS TSLEREDTGS  240
PDTENTSIGG GASDSRCFCR RSQRDGLCDE GENVVINGDG AVRSSVSTKR SRAAAIHNES  300
ERKRRDRINQ KMKTLQKLVP NSSKTDKASM LDEVIDYLKQ LQAQVQVMSR MSSMMMPMAM  360
PQLQMSAVMA QMAQMAQMAQ GMMSMGSLAP PAAAYAGLMP PFVPAMPWDP TTTSGAGAAG  420
TADRAPQPAA GVAGATPPDA FSAFLACQAQ QNGQQQPGGM EAYSKMVALY QKMSQQQQQG  480
QPSSSSKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300305ERKRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG474600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792491.10.0transcription factor UNE10 isoform X4
TrEMBLA0A2S3IPM30.0A0A2S3IPM3_9POAL; Uncharacterized protein
STRINGPavir.Ia02188.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-33bHLH family protein