PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG470700.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 212aa MW: 24160.4 Da PI: 6.4948 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.7 | 1.5e-14 | 31 | 73 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 gr +++E+ l +++++++G+ W++Iar+++ gRt++++k++w + Pavir.9NG470700.3.p 31 GRLSPQEERLAIELHARWGNS-WSRIARRLP-GRTDNDIKNYWKT 73 7889***************99.*********.***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.635 | 1 | 24 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.47E-19 | 10 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-7 | 10 | 36 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.722 | 25 | 79 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-13 | 29 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-13 | 31 | 73 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.49E-10 | 34 | 73 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-18 | 37 | 76 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MLMLICTGLN RTGKSCRLRW VNYLHPSRKH GRLSPQEERL AIELHARWGN SWSRIARRLP 60 GRTDNDIKNY WKTRMRMKAQ ERELSMSPSS SSFSLMYQSS CLLDTAPVDG MSCGDTRDVN 120 VSSCITGSAL ECTDGFPMDQ IWREMETPLQ APVSMPQGIH QADEKTCSSS VPFSPPATTA 180 SMWDDQCPEV FWNMDPEEIR MLTPQFDCRD W* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-16 | 11 | 79 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 9e-16 | 11 | 79 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 9e-16 | 11 | 79 | 37 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG470700.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021316574.1 | 1e-114 | myb-related protein MYBAS1 isoform X1 | ||||
Swissprot | Q53NK6 | 2e-70 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | A0A1B6PU49 | 1e-112 | A0A1B6PU49_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Ia02093.1.p | 1e-152 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 8e-46 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG470700.3.p |
Publications ? help Back to Top | |||
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