PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG461600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 278aa    MW: 30319.4 Da    PI: 9.6668
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG461600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53.1e-1396140347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ +++d+ +qlG+g W+ I++ +  +Rt+ q+ s+ qky
  Pavir.9NG461600.1.p  96 PWTEEEHRKFLDGLRQLGKGYWRGISKSFVITRTATQVASHAQKY 140
                          7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.16689145IPR017930Myb domain
SuperFamilySSF466894.38E-1790145IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-1792144IPR006447Myb domain, plants
SMARTSM007176.0E-893143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-1094139IPR009057Homeodomain-like
PfamPF002492.5E-1196140IPR001005SANT/Myb domain
CDDcd001672.74E-896141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGGVHRPKEE EEENGRKPAP VVLLRLFGVD VVVNEEPDDN DIGLRKSSSM PNLANPLLPH  60
GEAGERKGYA SDDLELASRH QKRRRRKAQE RKKGIPWTEE EHRKFLDGLR QLGKGYWRGI  120
SKSFVITRTA TQVASHAQKY FLRQTNPGKK KRRASLFDVG IADFRDHQVP PSPPNSATKP  180
APAQEIIHTD RGDVPLPSCR GFGEILGNNI QVSELTNYFM TTMGHVETSL ASMSSGLEPA  240
SSVSSLELSI AVNNLELSIA PPARCGCGGA AGAIKVL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18186KRRRRK
28192KRRRRKAQERKK
38292RRRRKAQERKK
4148152KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.268480.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed mainly in roots, leaves, and senescent leaves at similar levels. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG461600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795278.11e-158transcription factor MYBS2-like
SwissprotB8BI931e-77MYBS2_ORYSI; Transcription factor MYBS2
SwissprotQ7XC511e-77MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBLA0A3L6SAI01e-162A0A3L6SAI0_PANMI; Protein REVEILLE 2-like
STRINGPavir.J27770.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104643043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.13e-30MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]