PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG459700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 531aa    MW: 57528.1 Da    PI: 11.9133
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG459700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.72.7e-22271360186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                          +Wt++e+laLiea+r+++e+lr+g+l++++W++v++++        +   +s +qC++k+e+l+kry++++ ++ +r+++   ++p+f  
  Pavir.9NG459700.1.p 271 CWTHEETLALIEAYRDRWEALRKGNLRAADWDDVANAVtarcgrFPTATPKSGVQCRHKIEKLRKRYRAERSRSAGRSKG--PKWPFFPL 358
                          8*************************************998888788899*************************98443..47****98 PP

             trihelix  85 le 86 
                          l+
  Pavir.9NG459700.1.p 359 LH 360
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.6E-22270361No hitNo description
SMARTSM005952.0E-5279363IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MRRNEHTGVG GEGEKGEGNR TPRRRGTEVL GSSQFSVLPS KSCGIATQKS RRHVTRVGAA  60
AAPPRGRTIK RRSGSPDPSA WPLTASRGPN SRRLRGWSWI SERRGRVGEK SGRGRAEPGR  120
KGGGRPPLAT HPTTTHPDPT RHTATPRGCG CGCGGGPRPP RHGLRTMRRR VTGRGARAIT  180
PPPALLPPPL PFSSRPHPSA ARREGTRQTR QNHRTAPPAH AAAAVGDDAL PSRSFHREGA  240
AHAQRPPPHR TAPPPPFMTG SPPPPPLPPP CWTHEETLAL IEAYRDRWEA LRKGNLRAAD  300
WDDVANAVTA RCGRFPTATP KSGVQCRHKI EKLRKRYRAE RSRSAGRSKG PKWPFFPLLH  360
DLAGGGVPDP SPNAIVKIKT KGPVPPASTP SPVSSPSSEE AVRSRSLHGL ISNGGAGSGL  420
RFTIPKASRS RPAAVAAFNP ERNHGEDAAE SEAMAEVADA LRAVGERFLR MEERRLELSL  480
QMEKERMESE MKRTQSMLDA QQLFLEAFLG KQQQHKKARL SPASTAMEED *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.70070.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG459700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0407270.0BT040727.1 Zea mays full-length cDNA clone ZM_BFc0120O10 mRNA, complete cds.
GenBankEU9599370.0EU959937.1 Zea mays clone 220734 mRNA sequence.
GenBankKJ7278520.0KJ727852.1 Zea mays clone pUT5897 trihelix transcription factor (THX4) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798156.10.0trihelix transcription factor ASIL1
TrEMBLA0A3L6TM080.0A0A3L6TM08_PANMI; Trihelix transcription factor ASIL1
STRINGPavir.Ia02237.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.14e-22Trihelix family protein