PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG447500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YC
Protein Properties Length: 440aa    MW: 48077.9 Da    PI: 7.8087
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG447500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC54.72.3e-171352132098
                NF-YC  20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                          ++   rikki++adedv +i+  +Pvl+ska elf+ +l  r++  +  +  +t+  s ++++++  +++dfl d+v +
  Pavir.9NG447500.1.p 135 HFSAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIRKGVKTVGSSHLKQCIQTYNVYDFLRDVVSK 213
                          66778***********************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-21130199IPR009072Histone-fold
PfamPF008081.4E-14140198IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.2E-18145215IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MPPNPQSHPD SLFNVPVLSP PRSDVRSCAP RGERSNPWSR RRRFQALVPV PALLGRRRRH  60
EEEAGHPLPR CNFFSALSIS MVRFWYVPGC LGGNFTYLTT RTECIGYFDL RSRDKNKLLI  120
SSTASGTMRK KLDIHFSAPR IKKIMQADED VGKIALAVPV LVSKALELFL QDLCDRTYDI  180
TIRKGVKTVG SSHLKQCIQT YNVYDFLRDV VSKVPDTGTS DAIADDKLGK RRKSEEDGSD  240
EELKRTRNDA ESLTSNGRGH GRGRGRGRRG GRGAWREAFT THEQFVENQS SKPAGLKVEV  300
ANEVSDATEA KEATPVTSAR ACLRNIDLNL DPVDEDEVAV PPQTQSSAPA TNSAAANLEL  360
TAPATSSAAA NLGLTAPATS SSAATAGPSV PRSKEGAKLK EFLGGWELPD MNKMDVDPAQ  420
FALSSNHKLD DDEDYDNED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-16129199575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14058RRRFQALVPVPALLGRRRR
2257266RGHGRGRGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.424221e-40callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG447500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807205.10.0uncharacterized protein LOC112885778 isoform X1
TrEMBLA0A2T7EC650.0A0A2T7EC65_9POAL; Uncharacterized protein
STRINGPavir.J00079.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.16e-49nuclear factor Y, subunit C11