PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG437700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 226aa MW: 24360.3 Da PI: 6.5995

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG437700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.3	4.8e-15	77	121	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G g+W+ I+r + ++Rt+ q+ s+ qky Pavir.9NG437700.1.p 77 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTTRTPTQVASHAQKY 121 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.216	69	126	IPR017930	Myb domain
SuperFamily	SSF46689	4.52E-18	71	126	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-17	73	124	IPR006447	Myb domain, plants
SMART	SM00717	3.1E-12	74	124	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-12	75	120	IPR009057	Homeodomain-like
CDD	cd00167	5.52E-12	77	122	No hit	No description
Pfam	PF00249	1.8E-12	77	121	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MVSDVVAHYD DLENDVCFIE AGLVPFPHYG GGSAAGFTFD WDGGDDAAGG LGFKRSCYMA 60 GVKRGRGPDQ ERKKGIPWTE EEHKLFLMGL KKYGRGDWRN ISRNFVTTRT PTQVASHAQK 120 YFIRLNSGGK DKRRSSIHDI TTVNLPDEDG GNPSPSPPSV LTAASSTGGP VISEQFGVLV 180 DSSPAPAHHF MPHPYGHVKL EPGNSGFLDD SVLMQMQCGQ LQPLG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.17056	0.0	leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269\|PubMed:11937495}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG437700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068138	1e-170	AK068138.1 Oryza sativa Japonica Group cDNA clone:J013135D01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804913.1	1e-145	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	2e-60	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2S3HBI3	1e-143	A0A2S3HBI3_9POAL; Uncharacterized protein
STRING	Pavir.J01328.1.p	1e-167	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2274	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	9e-57	MYB family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG437700.1.p

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]